Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 6.8e-218 760.8 499 100.0
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 3.8e-128 462.6 550 52.5
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 3.3e-116 422.9 513 54.0
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 6.3e-115 418.7 536 54.3
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.8e-114 417.2 513 52.6
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 4.1e-114 416.0 513 52.6
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 5.3e-114 415.6 492 52.8
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 5.0e-112 409.1 494 52.6
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.6e-110 404.1 541 47.9
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.7e-110 403.3 538 47.0
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 2.6e-108 396.7 525 48.2
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.3e-107 394.4 494 51.2
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 6.3e-107 392.1 545 47.9
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 4.1e-106 389.4 553 45.9
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 4.1e-106 389.4 369 60.2
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 3.5e-105 386.3 566 47.3
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 3.2e-103 379.8 540 51.7
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 9.4e-103 378.3 521 50.7
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.6e-102 377.5 562 46.6
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 2.1e-102 377.1 375 57.9
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 4.7e-102 375.9 377 56.8
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 1.4e-101 374.4 387 57.6
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 4.0e-101 372.9 546 46.2
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 7.5e-100 368.6 496 50.0
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 7.5e-100 368.6 539 46.0
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.7e-99 367.5 384 55.2
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 2.2e-99 367.1 380 57.9
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 2.2e-99 367.1 547 45.2
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 4.8e-99 365.9 496 52.0
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 4.8e-99 365.9 509 47.7
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 2.4e-98 363.6 384 55.7
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 3.1e-98 363.2 507 52.7
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 3.1e-98 363.2 507 52.7
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.1e-98 363.2 552 46.2
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 4.1e-98 362.8 534 47.8
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 7.0e-98 362.1 376 56.6
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 9.1e-98 361.7 552 46.2
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.0e-97 360.5 376 56.9
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 5.9e-97 359.0 378 54.5
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 7.7e-97 358.6 516 47.5
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 1.7e-96 357.5 527 45.4
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.7e-96 357.5 527 45.4
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.2e-96 357.1 523 46.7
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.9e-96 356.7 516 47.3
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 2.9e-96 356.7 527 45.7
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.5e-96 355.5 376 57.2
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 8.5e-96 355.1 551 44.1
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.9e-95 354.0 527 45.0
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 1.9e-95 354.0 532 50.8
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 3.2e-95 353.2 523 45.7
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 7.2e-95 352.1 341 59.8
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 8.0e-94 348.6 380 53.7
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 2.3e-93 347.1 527 43.6
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 3.0e-93 346.7 526 51.1
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 3.0e-93 346.7 506 44.9
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.2e-92 344.7 376 54.0
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 1.5e-92 344.4 492 47.4
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 2.6e-92 343.6 521 45.1
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 2.6e-92 343.6 525 45.5
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 7.5e-92 342.0 562 48.0
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 1.3e-91 341.3 528 56.4
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 2.2e-91 340.5 564 41.7
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 3.7e-91 339.7 555 42.0
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 6.3e-91 339.0 542 41.5
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 2.4e-90 337.0 516 50.6
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 4.1e-90 336.3 514 47.5
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 5.4e-90 335.9 368 54.3
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 7.0e-90 335.5 510 45.9
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 9.1e-90 335.1 534 52.2
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 1.6e-89 334.3 387 52.7
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 2.7e-89 333.6 510 52.4
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 2.7e-89 333.6 555 41.3
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 3.5e-89 333.2 541 41.2
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 3.5e-89 333.2 519 42.8
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 4.5e-89 332.8 387 52.2
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 5.9e-89 332.4 510 51.2
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 5.9e-89 332.4 510 51.2
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 7.7e-89 332.0 499 52.3
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 7.7e-89 332.0 383 53.0
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 1.0e-88 331.6 510 51.6
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 1.3e-88 331.3 531 44.3
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 1.7e-88 330.9 517 47.0
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 2.9e-88 330.1 527 46.9
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 2.9e-88 330.1 535 42.8
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 5.0e-88 329.3 508 47.2
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.5e-87 327.8 558 48.9
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 1.9e-87 327.4 533 45.0
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 5.6e-87 325.9 547 44.4
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 2.1e-86 323.9 535 44.7
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 3.0e-85 320.1 528 43.8
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 5.2e-85 319.3 407 47.9
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 2.0e-84 317.4 510 50.8
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 2.0e-84 317.4 554 43.0
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 2.2e-83 313.9 555 42.2
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.2e-83 313.9 527 44.4
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 2.2e-83 313.9 522 41.0
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.1e-82 311.6 579 41.3
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.4e-82 310.5 504 50.4
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 9.2e-82 308.5 519 45.5
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.0e-81 307.4 386 54.9
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.3e-80 304.7 501 44.5
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 4.7e-78 296.2 337 50.4
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 6.2e-78 295.8 220 70.5
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.4e-77 294.7 360 51.1
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 3.1e-77 293.5 308 53.9
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 3.1e-77 293.5 372 47.8
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.0e-76 290.8 518 41.1
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.4e-76 289.7 365 49.6
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.9e-74 284.3 377 49.9
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 4.1e-74 283.1 428 46.5
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.7e-73 280.4 379 46.2
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.7e-57 227.3 141 75.2
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.2e-52 211.8 132 75.0
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 6.4e-43 179.5 350 36.3
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 8.4e-43 179.1 352 34.1
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.6e-41 174.9 225 44.4
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 1.6e-41 174.9 339 35.7
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 1.3e-40 171.8 197 48.7
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 3.3e-39 167.2 192 48.4
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.3e-39 167.2 108 73.1
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.2e-36 158.7 270 42.2
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 6.7e-32 142.9 191 44.5
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 1.4e-29 135.2 214 41.6
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 4.0e-29 133.7 205 42.4
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 3.4e-28 130.6 103 60.2
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 3.4e-28 130.6 103 60.2
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 1.0e-27 129.0 214 41.6
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 3.8e-27 127.1 250 37.6
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 4.6e-25 120.2 231 38.1
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 2.4e-21 107.8 111 55.0
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.8e-19 100.5 86 57.0
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.5e-15 88.6 65 67.7
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 2.5e-10 71.2 230 31.3
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 2.3e-08 64.7 120 37.5
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 3.9e-08 63.9 174 25.9
Ciclev10027463m.g Citrus clementina HOM05D000285 ORTHO05D000241 7.4e-07 59.7 189 25.4
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 9.7e-07 59.3 173 35.3
CsaV3_7G000160 Cucumis sativus L. HOM05D004650 ORTHO05D005715 2.8e-06 57.8 70 41.4
MELO3C013443.2 Cucumis melo HOM05D004650 ORTHO05D005715 4.8e-06 57.0 70 41.4


User provided reference genes

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