Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 2.0e-164 582.4 306 100.0
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.7e-110 403.3 279 80.6
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 3.3e-106 389.0 225 91.1
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 7.1e-101 371.3 293 69.3
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 6.0e-100 368.2 263 76.0
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 7.8e-100 367.9 278 71.2
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 8.6e-99 364.4 274 69.7
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 1.5e-98 363.6 283 71.0
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 3.3e-98 362.5 269 70.3
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 3.1e-96 355.9 268 72.4
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 4.0e-96 355.5 266 71.1
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 2.6e-95 352.8 260 73.1
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 9.9e-95 350.9 233 79.8
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-94 350.5 264 69.7
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 2.2e-94 349.7 263 70.3
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 2.2e-94 349.7 228 79.4
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 3.8e-94 349.0 266 70.3
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 6.4e-94 348.2 231 77.1
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 6.4e-94 348.2 257 69.6
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.4e-93 347.1 257 72.8
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.9e-93 346.7 262 69.5
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 4.2e-93 345.5 231 76.6
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 9.2e-93 344.4 284 67.6
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.2e-92 344.0 231 76.2
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.5e-92 342.4 265 69.1
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 6.0e-92 341.7 279 67.7
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 7.8e-92 341.3 264 68.6
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 7.8e-92 341.3 263 70.7
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-91 340.5 264 68.2
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 1.7e-91 340.1 264 68.2
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.1e-90 337.4 264 68.2
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 1.9e-90 336.7 236 72.9
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 3.3e-90 335.9 245 71.0
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 3.3e-90 335.9 222 77.5
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 9.6e-90 334.3 278 65.8
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 3.6e-89 332.4 224 77.7
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 6.2e-89 331.6 280 62.9
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 8.1e-89 331.3 285 65.3
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.4e-88 330.5 250 70.4
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 4.0e-88 328.9 277 65.0
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.2e-87 327.4 264 65.9
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 2.0e-87 326.6 266 65.4
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 4.4e-87 325.5 266 65.4
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 4.4e-87 325.5 266 65.4
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 5.8e-87 325.1 254 67.7
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 7.6e-87 324.7 223 76.2
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 7.6e-87 324.7 264 67.4
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 9.9e-87 324.3 238 70.2
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.3e-86 323.9 226 76.1
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.3e-86 323.9 228 75.0
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 2.2e-86 323.2 238 69.7
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 2.9e-86 322.8 230 71.3
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 2.9e-86 322.8 288 61.5
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 6.4e-86 321.6 231 72.3
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 1.1e-85 320.9 230 70.9
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.1e-85 320.9 230 70.9
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.1e-85 320.9 230 70.9
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.4e-85 320.5 261 66.7
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 1.9e-85 320.1 219 73.5
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 2.4e-85 319.7 229 74.7
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 3.2e-85 319.3 217 76.0
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 3.2e-85 319.3 290 62.8
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 4.2e-85 318.9 254 66.5
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 5.4e-85 318.5 242 70.2
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 5.4e-85 318.5 254 66.1
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 7.1e-85 318.2 229 72.9
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 2.1e-84 316.6 286 62.6
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 2.7e-84 316.2 282 59.6
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 2.7e-84 316.2 282 64.2
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 3.5e-84 315.8 225 75.6
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 4.6e-84 315.5 217 75.1
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 6.0e-84 315.1 216 75.0
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.7e-83 313.5 225 72.0
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.7e-83 313.5 225 72.0
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 2.3e-83 313.2 305 56.4
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 3.0e-83 312.8 193 82.4
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 6.6e-83 311.6 258 65.5
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.5e-82 309.7 228 71.9
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 3.3e-82 309.3 229 72.1
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 3.3e-82 309.3 227 69.2
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 5.6e-82 308.5 218 72.9
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 7.3e-82 308.1 286 61.9
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 9.6e-82 307.8 271 63.5
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 9.6e-82 307.8 207 76.3
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.3e-81 307.4 222 71.2
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.6e-81 307.0 250 66.4
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 2.1e-81 306.6 258 65.9
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 3.6e-81 305.8 206 75.7
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 1.1e-80 304.3 253 66.0
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 5.3e-80 302.0 228 69.7
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 6.9e-80 301.6 284 59.9
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 6.9e-80 301.6 221 69.2
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 1.5e-79 300.4 227 68.7
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 2.6e-79 299.7 227 70.5
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 4.5e-79 298.9 216 71.3
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 1.7e-78 297.0 228 69.7
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 4.9e-78 295.4 274 59.1
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 6.4e-78 295.0 243 63.4
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 8.4e-78 294.7 266 62.8
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 8.4e-78 294.7 212 73.6
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.9e-77 293.5 272 60.3
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 3.2e-77 292.7 292 57.5
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 6.0e-76 288.5 227 68.3
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 3.9e-75 285.8 228 64.5
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 4.3e-74 282.3 231 62.3
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.3e-73 280.8 178 77.5
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 5.3e-72 275.4 232 63.4
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.5e-71 273.9 195 74.9
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 6.4e-70 268.5 177 74.6
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 2.5e-69 266.5 204 67.2
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 5.5e-69 265.4 206 65.5
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.6e-68 263.8 229 61.1
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 3.0e-67 259.6 222 60.8
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 3.9e-67 259.2 229 60.7
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 2.5e-66 256.5 238 55.0
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.4e-64 250.8 258 55.0
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.3e-62 244.2 209 60.8
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 9.3e-61 238.0 249 54.6
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 9.3e-61 238.0 249 54.6
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.1e-53 214.5 191 58.6
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 1.4e-53 214.2 235 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 9.4e-53 211.5 189 54.0
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.6e-52 210.7 265 50.9
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 5.7e-50 202.2 190 54.2
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 6.5e-46 188.7 202 50.0
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 3.5e-39 166.4 245 41.2
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 3.5e-39 166.4 140 66.4
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.2e-36 157.9 127 66.1
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.2e-28 131.3 144 52.8
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 6.1e-28 129.0 204 38.2
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.3e-27 127.1 88 67.0
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.5e-26 124.4 86 68.6
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 5.7e-26 122.5 121 54.5
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.7e-23 113.6 187 36.9
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.2e-21 106.7 101 60.4
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 4.2e-21 106.3 186 37.1
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.6e-20 104.4 194 33.5
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.1e-16 90.1 186 31.7
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 5.2e-11 72.8 67 62.7
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.4e-08 64.7 219 29.7


User provided reference genes

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