Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.1e-243 846.3 455 100.0
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 1.6e-186 656.4 455 81.5
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 3.3e-179 632.1 492 74.2
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 4.3e-179 631.7 522 70.1
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 2.8e-178 629.0 503 70.4
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 2.6e-176 622.5 498 70.7
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 4.2e-174 615.1 462 75.8
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 7.1e-174 614.4 495 70.7
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 1.2e-173 613.6 494 71.9
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.6e-173 613.2 486 72.8
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.3e-172 609.4 492 69.7
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.5e-171 606.7 507 69.6
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.9e-171 606.3 497 71.0
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 1.9e-171 606.3 491 69.7
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 4.3e-171 605.1 561 64.5
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.1e-170 602.8 493 69.4
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 2.1e-170 602.8 460 74.1
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 6.2e-170 601.3 460 73.7
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 6.2e-170 601.3 460 73.9
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 8.2e-170 600.9 465 72.7
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.8e-169 599.7 514 68.9
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.8e-169 599.7 492 69.1
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.1e-169 599.0 492 68.9
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 4.0e-169 598.6 492 68.9
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 4.0e-169 598.6 506 68.4
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 9.0e-169 597.4 486 68.1
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 9.0e-169 597.4 457 73.5
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 4.5e-168 595.1 451 73.6
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.0e-167 594.0 507 68.2
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.3e-167 593.6 474 70.9
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 6.5e-167 591.3 479 70.6
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 5.5e-166 588.2 470 70.9
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.6e-165 586.6 452 73.9
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 2.1e-165 586.3 507 67.7
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 6.0e-165 584.7 495 68.1
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 6.0e-165 584.7 495 68.1
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 6.0e-165 584.7 495 68.1
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 1.0e-164 583.9 512 67.4
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 1.3e-164 583.6 467 70.7
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 1.3e-164 583.6 456 72.4
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 2.3e-164 582.8 458 72.3
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 3.0e-164 582.4 511 67.5
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 3.9e-164 582.0 459 71.0
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 3.9e-164 582.0 517 65.4
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 3.9e-164 582.0 482 69.5
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 6.7e-164 581.3 455 72.3
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 8.7e-164 580.9 459 70.8
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 8.7e-164 580.9 452 73.2
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 1.1e-163 580.5 483 68.7
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.9e-163 579.7 471 70.9
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 3.3e-163 578.9 454 71.4
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 3.3e-163 578.9 454 71.4
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 7.4e-163 577.8 493 67.3
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.6e-162 576.6 445 73.0
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 1.6e-162 576.6 448 71.2
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 2.2e-162 576.2 516 65.5
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 6.3e-162 574.7 469 69.9
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.1e-161 573.9 531 64.0
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 2.4e-161 572.8 493 67.5
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 3.1e-161 572.4 458 72.1
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 4.1e-161 572.0 446 72.0
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 4.1e-161 572.0 509 63.9
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 1.5e-160 570.1 436 72.9
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 2.0e-160 569.7 475 68.0
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 2.0e-160 569.7 516 65.3
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.0e-160 569.7 451 71.0
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 4.5e-160 568.5 487 66.5
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 1.0e-159 567.4 453 71.7
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 5.0e-159 565.1 457 70.9
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 4.2e-158 562.0 453 70.4
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 5.5e-158 561.6 504 64.3
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 7.2e-158 561.2 448 70.3
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 7.2e-158 561.2 489 67.3
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 9.3e-158 560.8 514 64.0
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.2e-157 560.5 453 70.6
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 1.6e-157 560.1 511 62.6
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 3.6e-157 558.9 439 71.3
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 4.6e-157 558.5 460 68.5
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 4.6e-157 558.5 450 69.1
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 3.0e-156 555.8 534 60.9
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 3.9e-156 555.4 445 70.1
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 3.9e-156 555.4 445 70.1
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 6.7e-156 554.7 456 69.5
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 8.7e-156 554.3 469 68.0
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 1.5e-155 553.5 519 63.2
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 5.7e-155 551.6 433 72.3
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 2.2e-154 549.7 456 68.4
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.8e-154 549.3 457 69.4
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 2.8e-154 549.3 494 65.6
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 4.1e-153 545.4 495 64.8
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 9.1e-153 544.3 441 69.6
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 9.1e-153 544.3 441 70.3
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.2e-152 543.9 488 65.2
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 2.2e-151 539.7 522 61.3
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 3.8e-151 538.9 428 70.1
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 8.5e-151 537.7 406 72.7
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 1.9e-150 536.6 458 65.7
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 7.2e-150 534.6 501 61.9
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.6e-149 533.5 460 65.0
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 7.9e-149 531.2 461 64.9
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 3.9e-148 528.9 458 65.1
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 5.1e-148 528.5 407 71.0
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 2.4e-145 519.6 433 67.4
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 5.3e-145 518.5 457 63.7
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 3.2e-142 509.2 451 63.9
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.0e-140 502.7 488 60.9
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 8.8e-140 501.1 457 63.5
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 1.3e-138 497.3 435 65.1
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 3.1e-137 492.7 453 60.5
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 5.0e-135 485.3 460 62.8
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 3.6e-133 479.2 461 62.3
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 6.7e-132 474.9 405 69.6
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 3.7e-130 469.2 445 61.6
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 9.5e-118 427.9 457 56.0
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 9.5e-118 427.9 457 56.0
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.2e-112 411.0 418 55.3
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 3.8e-111 406.0 431 54.5
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 2.5e-110 403.3 279 80.6
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 7.3e-110 401.7 417 54.4
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 3.0e-108 396.4 231 95.7
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 2.7e-104 383.3 362 62.2
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 8.9e-100 368.2 376 61.4
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.7e-98 364.0 368 56.5
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.6e-96 357.5 341 60.4
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 4.6e-80 302.8 434 43.8
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 1.2e-67 261.5 159 88.7
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 7.9e-64 248.8 156 87.2
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 8.7e-63 245.4 307 50.8
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 4.3e-62 243.0 422 40.5
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 4.2e-57 226.5 416 38.5
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 4.3e-54 216.5 387 35.7
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 3.5e-48 196.8 162 65.4
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 3.7e-45 186.8 454 35.0
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 4.1e-44 183.3 413 30.3
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 6.5e-42 176.0 377 32.6
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 2.3e-39 167.5 209 48.8
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 5.7e-38 162.9 140 65.0
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 8.2e-29 132.5 144 52.8
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 2.2e-26 124.4 86 67.4
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 1.2e-24 118.6 121 52.9
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 3.9e-23 113.6 235 38.3
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 1.1e-20 105.5 101 60.4
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 1.1e-20 105.5 91 67.0
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.0e-15 89.0 72 62.5
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 6.3e-13 79.7 269 27.9
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 1.9e-09 68.2 204 27.5
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 1.2e-08 65.5 255 27.5


User provided reference genes

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