Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 2.6e-189 665.2 334 100.0
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 2.5e-120 436.0 289 75.8
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.7e-108 396.7 299 67.6
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.0e-105 387.5 231 77.1
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 3.0e-105 386.0 287 66.9
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 5.7e-104 381.7 275 66.9
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 6.3e-103 378.3 305 61.6
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 2.4e-102 376.3 302 61.9
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 7.0e-102 374.8 302 61.6
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.6e-101 373.6 300 62.0
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 5.9e-101 371.7 293 65.2
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 7.7e-101 371.3 335 57.9
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.3e-100 370.5 284 63.4
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.7e-100 370.2 305 61.6
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 5.0e-100 368.6 298 62.4
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 1.5e-99 367.1 287 68.6
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.9e-99 366.7 304 59.9
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 7.2e-99 364.8 288 63.5
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 3.6e-98 362.5 306 59.5
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 4.0e-97 359.0 224 74.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 8.8e-97 357.8 221 74.7
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.5e-96 357.1 220 75.5
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 2.0e-96 356.7 297 59.9
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 2.0e-96 356.7 306 58.5
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 2.6e-96 356.3 294 58.5
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 1.3e-95 354.0 300 61.0
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.7e-95 353.6 331 54.1
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 2.8e-95 352.8 226 72.6
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 2.8e-95 352.8 279 60.6
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 3.7e-95 352.4 303 59.7
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 4.8e-95 352.1 294 59.2
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 4.8e-95 352.1 289 62.6
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 6.3e-95 351.7 273 62.3
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 6.3e-95 351.7 301 57.1
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 1.1e-94 350.9 283 60.8
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-94 350.5 304 56.9
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.4e-94 349.7 246 67.9
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 3.1e-94 349.4 223 70.0
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.1e-94 349.0 294 58.8
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 1.6e-93 347.1 301 60.8
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 3.5e-93 345.9 278 62.6
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 3.5e-93 345.9 279 62.4
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 3.5e-93 345.9 275 64.7
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 4.5e-93 345.5 301 60.8
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 7.7e-93 344.7 270 63.3
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 7.7e-93 344.7 233 70.0
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 7.7e-93 344.7 264 62.9
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.3e-92 344.0 271 61.3
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.3e-92 344.0 294 58.2
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 1.3e-92 344.0 236 67.4
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.2e-92 343.2 255 67.1
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 2.2e-92 343.2 270 60.4
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 2.9e-92 342.8 222 72.1
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 6.5e-92 341.7 283 58.7
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 8.5e-92 341.3 231 67.5
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.5e-91 340.5 291 60.8
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 1.9e-91 340.1 218 71.6
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 1.9e-91 340.1 223 70.0
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 2.5e-91 339.7 292 58.9
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.2e-91 339.3 223 70.0
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 3.2e-91 339.3 233 69.1
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 4.2e-91 339.0 262 63.0
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 5.5e-91 338.6 251 64.9
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 5.5e-91 338.6 221 72.9
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 9.4e-91 337.8 313 56.2
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.2e-90 337.4 218 74.8
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.6e-90 337.0 265 61.1
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 2.1e-90 336.7 223 72.2
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 2.1e-90 336.7 221 72.4
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 1.4e-89 334.0 209 72.2
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.4e-89 334.0 214 75.7
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 1.8e-89 333.6 309 57.6
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.8e-89 333.6 217 72.8
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 3.0e-89 332.8 225 68.0
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 4.0e-89 332.4 281 58.4
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 4.0e-89 332.4 216 70.4
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 4.0e-89 332.4 221 68.3
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.2e-89 332.0 223 69.5
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 8.8e-89 331.3 223 70.9
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 8.8e-89 331.3 236 64.4
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.2e-88 330.9 224 70.1
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.5e-88 330.5 223 69.5
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 3.4e-88 329.3 221 71.0
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.7e-87 327.0 231 66.2
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 3.7e-87 325.9 262 60.3
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 8.3e-87 324.7 215 71.2
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 1.4e-86 323.9 234 65.0
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 1.8e-86 323.6 228 68.0
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.8e-86 323.6 231 65.4
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.2e-85 320.9 272 57.7
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 2.0e-85 320.1 290 55.9
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 2.0e-85 320.1 214 72.4
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 3.5e-85 319.3 213 71.4
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 4.5e-85 318.9 290 55.5
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 4.5e-85 318.9 290 55.5
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 4.5e-85 318.9 268 60.4
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 7.7e-85 318.2 218 68.8
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.3e-84 317.4 360 47.5
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.7e-84 317.0 252 59.5
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.7e-84 317.0 211 68.7
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 5.0e-84 315.5 207 68.6
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 8.6e-84 314.7 202 71.3
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 1.1e-83 314.3 210 70.5
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.9e-83 313.5 220 65.5
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.8e-82 309.7 274 55.8
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 8.9e-81 304.7 225 63.6
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.3e-79 300.8 293 52.9
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.7e-74 282.3 300 52.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.0e-73 281.2 199 66.8
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 5.2e-73 278.9 384 42.7
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.5e-72 275.0 219 58.9
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 7.0e-70 268.5 203 61.6
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.0e-69 266.9 207 62.3
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 8.6e-68 261.5 223 57.8
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 1.6e-66 257.3 327 47.1
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.2e-65 252.3 226 55.8
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 6.8e-65 251.9 233 55.4
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 3.4e-64 249.6 280 50.0
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.9e-63 246.5 250 50.8
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.8e-58 229.9 225 55.6
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 1.8e-57 227.3 123 78.9
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 2.3e-57 226.9 119 80.7
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.6e-56 223.4 272 47.8
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 2.2e-55 220.3 195 57.9
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 6.4e-55 218.8 237 48.9
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 6.4e-55 218.8 155 63.9
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.7e-52 210.7 133 72.2
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.0e-52 209.9 123 73.2
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 2.4e-49 200.3 156 63.5
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.5e-43 181.0 229 46.3
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 2.5e-43 180.3 129 58.9
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 3.6e-42 176.4 156 56.4
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 1.1e-35 154.8 145 47.6
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 6.9e-33 145.6 99 66.7
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 3.9e-28 129.8 89 65.2
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 9.3e-22 108.6 133 45.1
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 9.0e-17 92.0 183 38.8
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.1e-11 75.1 146 38.4
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.7e-07 61.2 32 75.0
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 1.1e-06 58.5 60 50.0
Eucgr.H04277 Eucalyptus grandis HOM05D005134 ORTHO05D194288 5.5e-06 56.2 160 32.5
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 7.2e-06 55.8 82 36.6


User provided reference genes

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