Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 3.9e-142 508.1 248 100.0
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 1.7e-100 369.8 206 84.0
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 1.0e-97 360.5 206 80.6
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.3e-97 360.1 208 82.2
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 1.3e-97 360.1 204 82.4
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.7e-97 359.8 206 80.1
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.7e-97 359.8 206 80.1
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.7e-97 359.8 206 80.1
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 1.7e-97 359.8 204 82.4
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 2.3e-97 359.4 206 80.1
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 2.9e-97 359.0 206 81.1
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.8e-97 358.6 206 79.6
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 5.0e-97 358.2 206 82.5
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 6.6e-97 357.8 206 79.6
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 6.6e-97 357.8 206 79.6
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 8.6e-97 357.5 206 79.6
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 4.2e-96 355.1 206 77.7
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 5.5e-96 354.8 206 78.2
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 5.5e-96 354.8 208 79.3
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 7.2e-96 354.4 206 81.1
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 9.5e-96 354.0 206 82.0
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.2e-95 353.6 206 81.1
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 2.8e-95 352.4 206 79.6
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 3.6e-95 352.1 206 78.6
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.7e-95 351.7 206 80.6
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 6.1e-95 351.3 208 79.3
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 8.0e-95 350.9 206 80.1
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 8.0e-95 350.9 206 80.1
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.0e-94 350.5 206 79.6
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.3e-94 349.4 222 74.3
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.0e-94 349.0 203 79.8
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.0e-94 349.0 208 78.8
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 4.0e-94 348.6 206 78.6
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.2e-94 348.2 208 78.8
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 6.8e-94 347.8 206 77.7
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 6.8e-94 347.8 206 78.6
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 8.9e-94 347.4 206 79.1
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 8.9e-94 347.4 206 80.1
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.2e-93 347.1 206 77.2
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.5e-93 346.7 206 77.2
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 2.0e-93 346.3 206 76.7
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 2.0e-93 346.3 206 75.7
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 2.6e-93 345.9 206 77.7
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 3.4e-93 345.5 206 76.7
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 4.4e-93 345.1 206 76.2
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 7.5e-93 344.4 206 77.7
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 9.8e-93 344.0 206 77.7
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 9.8e-93 344.0 206 77.2
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.2e-92 342.8 206 77.2
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 4.9e-92 341.7 206 75.7
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 4.9e-92 341.7 221 72.4
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 4.9e-92 341.7 206 77.7
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 2.4e-91 339.3 206 76.7
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 5.4e-91 338.2 214 74.8
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 7.0e-91 337.8 211 75.4
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 7.0e-91 337.8 206 75.2
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 7.0e-91 337.8 207 74.9
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 9.2e-91 337.4 209 77.0
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.2e-90 337.0 206 76.7
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.2e-90 337.0 227 72.2
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 1.2e-90 337.0 206 77.2
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 1.6e-90 336.7 206 76.2
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 2.7e-90 335.9 201 78.6
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 2.7e-90 335.9 206 76.2
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 4.5e-90 335.1 206 76.2
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 5.9e-90 334.7 206 75.7
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 1.0e-89 334.0 206 72.8
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.3e-89 333.6 206 73.8
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.9e-89 332.4 206 74.3
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.9e-89 332.4 206 74.3
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 2.9e-89 332.4 204 75.0
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 5.0e-89 331.6 206 74.8
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 1.1e-88 330.5 206 74.3
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 1.1e-88 330.5 206 72.8
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 1.5e-88 330.1 206 72.8
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.5e-88 330.1 206 72.8
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 3.3e-88 328.9 206 74.3
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 3.3e-88 328.9 206 72.8
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 4.3e-88 328.6 206 72.3
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 4.3e-88 328.6 206 72.8
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 5.6e-88 328.2 206 72.3
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 5.6e-88 328.2 206 71.8
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 5.6e-88 328.2 206 72.3
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 5.6e-88 328.2 208 72.6
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.2e-87 327.0 206 74.8
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 1.6e-87 326.6 206 73.3
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 1.6e-87 326.6 206 73.3
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 1.6e-87 326.6 206 73.3
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 1.6e-87 326.6 206 73.8
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 1.6e-87 326.6 206 74.8
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 2.1e-87 326.2 206 73.3
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 2.1e-87 326.2 206 75.7
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 3.6e-87 325.5 206 73.3
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 3.6e-87 325.5 208 72.1
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 3.6e-87 325.5 207 72.9
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 6.1e-87 324.7 206 70.9
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 8.0e-87 324.3 206 72.3
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 8.0e-87 324.3 206 72.3
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-86 323.6 206 72.3
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 2.3e-86 322.8 206 73.8
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 2.3e-86 322.8 206 71.8
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 3.1e-86 322.4 206 73.3
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 4.0e-86 322.0 206 71.8
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 4.0e-86 322.0 206 71.8
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 8.9e-86 320.9 206 71.8
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 8.9e-86 320.9 206 72.8
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 2.0e-85 319.7 206 72.8
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 2.6e-85 319.3 206 70.9
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 4.4e-85 318.5 206 70.4
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 5.8e-85 318.2 206 70.4
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 5.8e-85 318.2 206 70.4
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 5.8e-85 318.2 206 70.4
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 3.7e-84 315.5 233 65.7
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.2e-82 310.5 187 74.3
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 3.5e-82 308.9 230 65.2
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 6.0e-82 308.1 253 61.7
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 5.6e-80 301.6 184 77.2
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 5.2e-78 295.0 211 66.8
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 2.4e-75 286.2 206 62.1
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 2.4e-75 286.2 208 60.1
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 2.7e-74 282.7 208 66.3
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 2.7e-74 282.7 214 61.7
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.6e-74 282.0 206 66.5
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 3.9e-73 278.9 206 66.5
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 2.8e-71 272.7 215 62.3
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.3e-68 263.8 174 71.8
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 8.3e-68 261.2 225 56.4
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.1e-67 260.8 207 57.0
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 1.6e-66 256.9 142 83.1
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 6.0e-66 255.0 207 57.5
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.0e-57 227.6 156 69.2
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 6.6e-57 224.9 206 56.8
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 1.2e-55 220.7 225 50.7
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 3.6e-55 219.2 128 78.1
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 1.1e-51 207.6 207 48.3
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 4.2e-51 205.7 126 76.2
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 1.2e-45 187.6 184 47.8
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 1.6e-42 177.2 161 50.9
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.0e-37 160.2 98 74.5
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 3.2e-35 152.9 85 81.2
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 2.6e-21 106.7 66 74.2
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 2.2e-20 103.6 112 48.2
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 3.2e-19 99.8 64 75.0
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.6e-18 97.4 56 78.6
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.6e-18 97.4 56 78.6
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.6e-18 97.4 56 78.6
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 4.6e-18 95.9 56 76.8
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 2.3e-17 93.6 55 76.4
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.8e-14 84.0 54 66.7
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 3.4e-13 79.7 101 46.5
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 3.0e-09 66.6 32 87.5
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.3e-08 63.2 36 77.8
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.3e-08 63.2 36 77.8
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 3.7e-07 59.7 53 58.5
Gorai.011G197900 Gossypium raimondii HOM05D004519 ORTHO05D017048 1.1e-06 58.2 36 72.2


User provided reference genes

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