Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 5.2e-183 644.4 370 100.0
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 2.1e-62 243.8 434 44.2
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 2.2e-56 223.8 399 44.1
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 4.9e-56 222.6 369 45.3
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 8.4e-56 221.9 400 44.0
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 9.0e-50 201.8 410 39.0
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 9.0e-50 201.8 433 40.2
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 4.4e-49 199.5 424 40.8
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 1.3e-48 198.0 391 41.2
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 2.4e-47 193.7 424 40.1
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 2.7e-46 190.3 338 42.0
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 3.0e-45 186.8 309 42.7
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 5.6e-44 182.6 346 41.6
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 1.6e-43 181.0 464 38.1
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 8.1e-43 178.7 362 42.5
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 9.0e-42 175.3 376 38.8
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 1.2e-41 174.9 392 38.3
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 7.6e-41 172.2 414 37.9
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.7e-40 171.0 433 36.7
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.9e-40 170.2 373 38.6
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.1e-39 168.3 472 36.7
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 1.4e-39 167.9 306 40.5
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.4e-39 167.2 363 38.0
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 9.3e-39 165.2 389 40.4
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 2.1e-38 164.1 352 41.8
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.5e-38 163.3 364 40.1
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.5e-38 163.3 316 42.7
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.5e-38 163.3 364 36.8
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.6e-38 162.9 364 39.8
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 4.6e-38 162.9 412 37.6
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 7.9e-38 162.2 303 42.9
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.0e-37 161.8 380 35.8
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.1e-36 158.3 358 34.4
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 7.4e-36 155.6 486 35.2
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 1.3e-35 154.8 275 43.6
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.7e-35 153.3 293 42.0
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.7e-35 153.3 362 36.5
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 6.2e-35 152.5 163 63.2
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 8.1e-35 152.1 360 37.5
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 8.1e-35 152.1 420 36.0
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.1e-34 151.8 370 37.6
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.1e-34 151.8 475 34.7
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.4e-34 151.4 138 61.6
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 3.1e-34 150.2 452 33.8
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 4.0e-34 149.8 277 44.8
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 4.0e-34 149.8 296 42.9
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 9.0e-34 148.7 199 53.3
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 2.0e-33 147.5 296 39.9
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 4.5e-33 146.4 385 33.2
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.8e-33 146.0 290 42.4
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 5.8e-33 146.0 340 36.5
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 7.6e-33 145.6 202 50.5
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.0e-32 145.2 370 37.0
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.2e-32 144.1 143 66.4
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 2.9e-32 143.7 395 35.9
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.9e-32 143.7 427 41.5
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.9e-32 143.7 274 39.4
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 3.8e-32 143.3 396 34.6
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 1.1e-31 141.7 280 40.4
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 1.1e-31 141.7 168 53.6
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.4e-31 141.4 284 41.5
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.4e-31 141.4 439 34.9
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.4e-31 141.4 439 34.9
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.9e-31 141.0 386 42.5
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.5e-31 140.6 221 49.8
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.5e-31 140.6 221 49.8
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 7.1e-31 139.0 380 39.5
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 9.3e-31 138.7 270 42.6
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.2e-30 138.3 285 42.8
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 1.6e-30 137.9 369 37.1
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 1.6e-30 137.9 361 39.6
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.6e-30 137.9 299 37.5
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 3.5e-30 136.7 586 31.2
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.6e-30 136.3 281 42.3
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 6.0e-30 136.0 415 34.7
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 7.9e-30 135.6 277 38.6
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.3e-29 134.8 389 36.2
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.3e-29 134.8 293 40.6
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 2.3e-29 134.0 374 35.8
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.3e-29 134.0 279 42.3
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.0e-29 133.7 144 63.9
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 8.7e-29 132.1 425 34.6
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.5e-28 131.3 276 40.9
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 2.5e-28 130.6 423 32.4
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 4.3e-28 129.8 423 33.8
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 2.8e-27 127.1 467 31.5
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 8.2e-27 125.6 380 38.4
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.8e-26 124.4 400 35.8
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 1.8e-26 124.4 385 33.5
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 6.9e-26 122.5 321 35.5
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 6.9e-26 122.5 321 35.5
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 9.0e-26 122.1 303 32.3
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 2.6e-25 120.6 407 32.9
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 2.6e-25 120.6 407 32.9
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 3.4e-25 120.2 408 32.8
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 4.5e-25 119.8 173 49.1
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 7.6e-25 119.0 418 39.7
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 7.6e-25 119.0 330 33.9
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 1.0e-24 118.6 183 45.4
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 2.2e-24 117.5 371 34.0
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 2.9e-24 117.1 304 37.8
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 2.9e-24 117.1 420 31.7
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 6.5e-24 115.9 402 33.8
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 4.2e-23 113.2 220 39.1
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 1.2e-22 111.7 426 32.4
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 2.7e-22 110.5 511 28.4
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 4.6e-22 109.8 387 32.6
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 6.1e-22 109.4 154 50.6
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.8e-21 107.8 130 52.3
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.3e-21 107.5 155 52.3
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.9e-21 106.7 129 49.6
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 1.1e-20 105.1 374 31.3
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 4.3e-20 103.2 125 58.4
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 3.7e-19 100.1 212 43.9
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.8e-19 99.8 129 48.8
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 4.1e-18 96.7 357 34.5
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 9.0e-18 95.5 291 33.3
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 2.6e-17 94.0 137 46.0
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.7e-16 91.3 129 43.4
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 6.5e-16 89.4 209 34.0
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 6.5e-16 89.4 129 45.7
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 1.4e-13 81.6 290 32.4
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.1e-13 79.7 349 35.5
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 5.1e-13 79.7 179 36.3
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.5e-12 77.4 111 46.8
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 2.2e-11 74.3 49 73.5
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 6.3e-11 72.8 370 27.3
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 6.3e-11 72.8 155 44.5
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 7.7e-09 65.9 375 26.9
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.0e-08 65.5 360 28.1
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.3e-08 65.1 193 30.6
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 2.9e-08 63.9 194 34.5
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 6.5e-08 62.8 135 43.7
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.1e-07 62.0 369 27.6


User provided reference genes

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