Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 6.9e-128 460.7 239 100.0
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.2e-92 343.6 247 76.1
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 6.3e-89 331.3 241 75.9
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 1.1e-88 330.5 241 75.9
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 1.4e-88 330.1 241 74.7
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 2.3e-86 322.8 241 73.9
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.2e-82 310.5 241 70.5
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-82 307.8 241 72.2
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.9e-81 305.1 242 71.9
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.4e-80 303.5 241 69.3
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 2.4e-80 302.8 239 69.0
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 9.2e-80 300.8 237 70.9
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-79 300.4 237 71.3
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-79 300.1 242 70.7
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.8e-79 297.7 242 69.0
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.0e-78 297.4 242 69.4
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.9e-78 295.8 242 68.2
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 5.6e-77 291.6 241 68.9
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 5.2e-75 285.0 241 67.2
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.2e-75 285.0 245 66.5
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.5e-74 283.5 242 65.7
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.6e-74 282.7 244 66.4
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 3.4e-74 282.3 244 65.2
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.3e-73 280.4 249 61.4
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.3e-73 280.4 242 65.3
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.9e-73 279.3 239 66.5
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 4.9e-73 278.5 239 64.0
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 1.4e-72 276.9 239 64.9
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.4e-72 276.2 239 64.9
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.2e-72 275.8 241 62.7
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.4e-72 275.0 215 71.2
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.4e-72 275.0 215 71.2
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 5.4e-72 275.0 241 62.7
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.2e-71 273.9 232 63.8
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 2.7e-71 272.7 241 62.7
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.5e-71 272.3 215 71.2
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.0e-70 270.8 244 63.1
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 6.6e-70 268.1 240 60.0
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.1e-69 267.3 242 62.8
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.9e-69 266.5 323 52.6
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.2e-68 263.8 241 61.0
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 8.0e-68 261.2 250 59.6
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.8e-67 260.0 195 71.3
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.5e-66 256.9 238 61.3
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 3.4e-66 255.8 232 61.6
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 4.4e-66 255.4 242 62.4
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 7.5e-66 254.6 238 62.2
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 9.8e-66 254.2 231 61.5
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 9.8e-66 254.2 241 60.6
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.9e-65 251.9 195 74.9
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 6.4e-65 251.5 208 65.9
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 6.4e-65 251.5 329 50.8
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 2.4e-64 249.6 240 61.2
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 2.4e-64 249.6 244 60.7
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 5.4e-64 248.4 240 59.6
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.6e-63 246.9 232 60.8
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.0e-63 246.5 246 60.2
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 2.0e-63 246.5 203 67.0
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 2.7e-63 246.1 225 62.2
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.5e-63 245.7 233 62.7
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 7.8e-63 244.6 233 58.8
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.0e-62 244.2 194 68.0
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 3.0e-62 242.7 232 60.3
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.0e-62 241.9 232 59.1
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.0e-62 241.9 232 59.1
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.1e-61 240.7 241 61.4
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.1e-61 240.7 237 60.3
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.9e-61 240.0 242 59.5
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.2e-60 237.3 241 56.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.2e-60 237.3 241 59.3
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.2e-60 237.3 242 59.5
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.6e-60 236.9 194 68.6
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 2.1e-60 236.5 242 59.1
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 2.8e-60 236.1 241 57.7
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 6.2e-60 235.0 266 55.3
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 4.0e-59 232.3 210 63.3
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 5.2e-59 231.9 243 57.6
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 8.9e-59 231.1 239 58.2
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 8.9e-59 231.1 240 57.9
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.0e-58 229.9 214 58.9
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 4.4e-58 228.8 230 55.7
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 1.7e-57 226.9 217 59.4
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 8.3e-57 224.6 232 59.5
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.4e-56 223.8 229 57.6
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 2.4e-56 223.0 240 56.2
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.6e-55 220.3 224 57.6
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.6e-55 220.3 149 77.2
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 2.7e-55 219.5 197 62.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.6e-55 218.8 228 58.3
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 4.6e-55 218.8 240 54.6
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 7.8e-55 218.0 233 54.9
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 7.8e-55 218.0 225 57.3
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 7.8e-55 218.0 243 57.2
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.3e-54 217.2 252 54.4
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 6.6e-54 214.9 215 55.8
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.5e-53 213.8 226 56.6
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.5e-53 213.8 230 57.0
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 3.3e-53 212.6 240 54.6
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 4.3e-53 212.2 222 56.3
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 4.3e-53 212.2 224 57.1
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 5.6e-53 211.8 240 54.6
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 9.5e-53 211.1 233 55.4
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 1.6e-52 210.3 243 56.4
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.1e-52 209.9 248 54.0
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.7e-52 208.8 181 64.6
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 6.2e-52 208.4 234 51.3
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.1e-51 206.1 216 54.6
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 4.0e-51 205.7 217 53.9
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.6e-50 203.0 222 56.3
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.6e-50 203.0 196 60.2
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 7.6e-50 201.4 240 52.9
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 4.9e-49 198.7 208 56.2
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.4e-48 197.2 281 45.6
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.4e-48 197.2 198 57.6
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.2e-48 196.1 246 50.0
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 9.2e-48 194.5 240 50.8
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 1.2e-47 194.1 215 54.4
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.2e-47 194.1 195 59.0
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.1e-47 193.4 213 55.9
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.7e-47 193.0 223 52.0
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.7e-47 193.0 236 53.0
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.0e-46 191.0 209 55.5
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 2.3e-46 189.9 242 52.1
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 5.1e-46 188.7 189 54.5
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 8.7e-46 188.0 209 54.1
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.5e-45 187.2 208 56.2
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.9e-45 186.8 247 48.2
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 3.3e-45 186.0 208 55.8
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 3.3e-45 186.0 208 55.8
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.6e-44 183.7 246 47.6
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 3.6e-44 182.6 201 53.7
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 6.2e-44 181.8 241 51.9
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.4e-43 180.6 198 53.5
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-43 180.3 210 54.8
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 9.0e-43 177.9 139 68.3
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 2.6e-42 176.4 224 48.7
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 4.4e-42 175.6 245 49.8
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 4.4e-42 175.6 198 51.0
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 2.2e-41 173.3 197 53.8
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 8.4e-41 171.4 231 47.6
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.7e-39 166.4 119 71.4
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.5e-39 166.0 116 66.4
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 3.5e-39 166.0 137 65.7
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 6.0e-39 165.2 139 66.2
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.7e-38 163.7 243 47.7
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.1e-37 161.0 201 52.2
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.5e-37 160.6 201 49.8
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 9.6e-37 157.9 114 68.4
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 8.1e-36 154.8 202 49.5
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.5e-34 150.6 184 48.4
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.7e-33 147.1 162 55.6
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.6e-31 140.6 85 80.0
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.6e-31 140.6 85 80.0
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.5e-31 139.4 117 60.7
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.6e-31 139.0 245 44.1
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.1e-27 127.9 122 58.2
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.8e-26 122.1 104 59.6
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 1.3e-25 120.9 166 47.0
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.8e-25 119.4 79 70.9
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 3.9e-22 109.4 88 63.6
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 3.9e-22 109.4 60 86.7
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.8e-20 102.4 241 36.5
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 4.6e-15 85.9 111 43.2
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 6.3e-12 75.5 80 50.0
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 2.6e-10 70.1 40 82.5
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.4e-10 69.7 109 38.5
QL09p050907 Quercus lobata HOM05D004056 ORTHO05D004894 8.5e-09 65.1 96 47.9
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 3.0e-06 56.6 41 61.0


User provided reference genes

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