Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 9.9e-311 1069.3 559 100.0
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 1.2e-242 843.2 565 78.4
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 3.2e-240 835.1 572 77.4
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 9.2e-240 833.6 565 78.2
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 3.3e-237 825.1 567 76.5
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 1.4e-235 819.7 566 76.1
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 5.2e-235 817.8 566 76.3
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.5e-234 816.2 570 77.9
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 2.0e-234 815.8 567 76.9
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 2.6e-234 815.5 565 77.0
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 2.2e-233 812.4 559 75.0
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.2e-232 808.5 561 75.4
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.2e-231 806.6 565 76.5
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 2.7e-231 805.4 565 76.3
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 1.3e-230 803.1 567 75.1
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.3e-230 803.1 565 74.2
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 3.0e-230 802.0 565 75.2
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.1e-229 800.0 567 75.8
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.1e-229 800.0 565 73.8
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.5e-229 799.7 565 75.8
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 2.5e-229 798.9 565 75.8
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 4.3e-229 798.1 565 75.6
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 9.5e-229 797.0 565 73.8
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 6.2e-228 794.3 566 74.4
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 2.1e-223 779.2 567 73.5
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.5e-223 778.5 562 74.4
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 2.4e-219 765.8 569 71.5
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.2e-218 763.5 567 71.8
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.2e-218 763.5 563 72.3
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.4e-216 756.5 645 65.6
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 9.2e-216 753.8 566 71.6
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.7e-215 752.3 570 71.8
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.3e-214 750.0 565 69.9
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.5e-213 745.7 617 65.8
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.8e-211 739.6 569 70.1
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 9.0e-211 737.3 566 71.4
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 6.4e-209 731.1 519 74.6
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.7e-206 723.0 568 69.0
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.5e-205 719.9 566 67.5
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 4.8e-204 714.9 566 68.7
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 8.1e-204 714.1 566 67.8
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 4.0e-203 711.8 567 66.1
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 2.0e-202 709.5 566 67.3
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 2.6e-202 709.1 568 71.7
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 3.4e-202 708.8 568 67.4
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.8e-201 705.3 562 66.9
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 4.9e-201 704.9 563 67.1
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.1e-200 703.7 566 70.1
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 1.4e-200 703.4 539 70.9
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 2.4e-200 702.6 560 70.7
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.4e-200 702.6 563 67.1
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.2e-199 700.3 559 66.7
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 6.0e-199 698.0 564 67.4
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 8.1e-196 687.6 572 68.2
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.1e-195 687.2 572 67.5
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.4e-195 686.8 481 75.3
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 6.9e-195 684.5 571 66.0
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 9.0e-195 684.1 572 64.9
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.2e-194 683.7 564 66.5
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 7.6e-194 681.0 535 67.7
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 9.9e-194 680.6 560 67.5
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 2.2e-193 679.5 572 64.7
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.9e-193 679.1 578 64.0
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 6.4e-193 677.9 591 64.6
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 1.1e-192 677.2 559 64.8
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.1e-192 677.2 558 64.7
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 4.2e-192 675.2 570 67.0
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 4.6e-191 671.8 558 64.2
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 6.0e-191 671.4 627 63.2
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 3.3e-189 665.6 558 64.0
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 7.4e-189 664.5 567 63.0
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 2.8e-188 662.5 583 64.7
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.5e-186 656.8 583 64.5
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 2.2e-185 652.9 571 63.0
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 9.3e-184 647.5 578 63.8
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 3.9e-182 642.1 566 62.4
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 5.1e-182 641.7 575 63.1
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.1e-181 640.6 692 54.8
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 2.4e-179 632.9 464 74.1
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 3.1e-179 632.5 585 62.2
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 4.1e-179 632.1 696 53.0
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 2.6e-178 629.4 563 62.5
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 8.5e-177 624.4 587 63.9
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.6e-175 620.2 580 62.1
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 4.6e-175 618.6 579 62.2
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 5.1e-174 615.1 481 65.9
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 8.8e-174 614.4 586 61.4
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 2.0e-173 613.2 581 60.8
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 2.5e-173 612.8 583 60.2
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 9.7e-173 610.9 534 62.9
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 7.7e-170 601.3 569 60.5
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 2.2e-169 599.7 580 59.5
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 2.9e-169 599.4 581 61.3
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 2.9e-169 599.4 651 53.9
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 8.5e-169 597.8 585 60.0
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 4.2e-160 568.9 577 58.6
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 3.7e-156 555.8 585 59.3
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 6.3e-156 555.1 585 59.3
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 6.3e-156 555.1 585 59.3
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.4e-155 553.9 543 58.2
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 5.3e-155 552.0 566 57.1
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 3.5e-154 549.3 567 56.1
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.7e-153 547.0 587 56.4
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 5.0e-153 545.4 587 56.2
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 3.0e-150 536.2 566 58.0
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 6.7e-150 535.0 428 69.4
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 4.4e-141 505.8 585 52.3
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 1.2e-138 497.7 415 66.0
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 7.7e-138 495.0 576 51.7
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 5.9e-130 468.8 594 49.7
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 8.6e-129 464.9 570 50.9
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 6.8e-126 455.3 576 49.8
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 3.5e-122 443.0 404 61.9
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 3.9e-121 439.5 563 47.1
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 2.4e-99 367.1 579 43.4
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.7e-97 360.9 576 41.8
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 6.2e-95 352.4 383 54.6
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 6.6e-89 332.4 314 60.8
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.1e-79 300.8 360 48.1
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 4.9e-76 289.7 496 40.9
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 4.1e-54 216.9 259 44.8
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.5e-51 207.6 488 35.9
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.7e-36 158.3 171 55.0
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.0e-25 122.5 86 73.3
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 4.0e-25 120.6 84 73.8
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 5.2e-25 120.2 117 59.8
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.4e-22 112.1 100 62.0
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.5e-16 92.0 200 29.0
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.4e-14 84.7 199 30.2
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 3.2e-14 84.3 220 29.5
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 4.1e-14 84.0 69 65.2
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.5e-13 80.9 151 37.7
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.0e-12 77.0 220 26.4
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 2.3e-09 68.2 63 65.1
Medtr7g014365 Medicago truncatula HOM05D000103 ORTHO05D006745 1.7e-07 62.0 52 63.5
TAR633G2245 Trochodendron aralioides HOM05D005604 ORTHO05D006745 6.4e-07 60.1 96 51.0
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 8.3e-07 59.7 47 68.1


User provided reference genes

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