Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 1.3e-120 436.4 222 100.0
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 4.8e-83 311.6 206 76.2
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 1.9e-71 273.1 221 66.1
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 4.2e-71 271.9 217 67.3
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 5.5e-71 271.6 194 71.6
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 4.7e-70 268.5 202 69.8
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 4.7e-70 268.5 196 71.4
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 2.3e-69 266.2 226 65.5
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 5.2e-69 265.0 222 66.2
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 6.8e-69 264.6 224 65.2
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 2.6e-68 262.7 199 71.9
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 4.4e-68 261.9 196 70.4
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 5.7e-68 261.5 167 79.6
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 5.7e-68 261.5 197 70.1
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 5.7e-68 261.5 179 75.4
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 7.5e-68 261.2 208 68.3
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 7.5e-68 261.2 194 73.2
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 7.5e-68 261.2 169 78.1
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 1.3e-67 260.4 219 65.3
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 1.7e-67 260.0 202 68.3
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 1.7e-67 260.0 166 78.9
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 1.7e-67 260.0 220 64.1
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 2.2e-67 259.6 220 64.5
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 1.1e-66 257.3 158 79.1
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 1.1e-66 257.3 197 70.1
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 1.1e-66 257.3 197 70.1
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 1.4e-66 256.9 218 64.7
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 1.4e-66 256.9 202 68.3
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 2.4e-66 256.1 217 66.4
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 3.1e-66 255.8 202 66.8
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 4.1e-66 255.4 161 80.1
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 5.4e-66 255.0 198 66.2
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 9.1e-66 254.2 181 69.6
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.2e-65 253.8 167 75.4
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 1.2e-65 253.8 239 58.6
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 2.0e-65 253.1 181 69.6
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 2.0e-65 253.1 220 61.8
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 2.7e-65 252.7 210 65.2
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 2.7e-65 252.7 197 68.5
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 2.7e-65 252.7 148 83.1
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 2.7e-65 252.7 178 72.5
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 3.5e-65 252.3 171 76.0
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 3.5e-65 252.3 164 75.6
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 4.5e-65 251.9 159 81.8
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 4.5e-65 251.9 167 74.3
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 5.9e-65 251.5 167 73.7
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 7.7e-65 251.1 211 64.9
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 1.0e-64 250.8 225 60.0
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 2.2e-64 249.6 225 61.8
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.2e-64 249.6 189 68.3
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 2.9e-64 249.2 215 62.3
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 2.9e-64 249.2 169 77.5
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.8e-64 248.8 182 70.3
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 6.5e-64 248.1 186 68.8
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 8.5e-64 247.7 217 62.2
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 8.5e-64 247.7 173 73.4
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 1.1e-63 247.3 169 74.0
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 1.1e-63 247.3 225 63.6
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 3.2e-63 245.7 201 63.7
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 9.5e-63 244.2 199 66.3
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 9.5e-63 244.2 208 63.5
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.7e-62 242.7 168 75.0
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 6.1e-62 241.5 224 59.4
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 6.1e-62 241.5 177 72.3
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 8.0e-62 241.1 166 74.1
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 1.0e-61 240.7 170 71.8
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 2.3e-61 239.6 153 79.1
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 5.2e-61 238.4 220 61.4
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 6.8e-61 238.0 182 67.0
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 8.8e-61 237.7 202 63.9
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 1.2e-60 237.3 162 75.3
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 1.5e-60 236.9 173 69.4
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 4.4e-60 235.3 148 79.7
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 7.5e-60 234.6 144 81.2
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 7.5e-60 234.6 172 72.1
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 7.5e-60 234.6 155 77.4
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 9.8e-60 234.2 224 58.0
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 1.3e-59 233.8 136 83.1
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 2.2e-59 233.0 158 79.1
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 2.8e-59 232.6 209 61.2
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 1.4e-58 230.3 148 75.0
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 4.1e-58 228.8 149 76.5
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 5.4e-58 228.4 221 56.6
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 7.0e-58 228.0 246 52.8
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.2e-57 227.3 176 65.3
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.2e-57 227.3 176 65.3
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 3.5e-57 225.7 144 75.7
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 7.7e-57 224.6 152 75.0
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 5.0e-56 221.9 161 71.4
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 5.6e-55 218.4 154 70.1
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 2.8e-54 216.1 170 64.1
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 6.8e-53 211.5 199 60.8
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.5e-52 210.3 214 54.7
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 2.2e-51 206.5 163 66.3
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 2.2e-51 206.5 143 72.0
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 2.9e-51 206.1 171 63.2
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 3.7e-51 205.7 164 67.1
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 4.9e-51 205.3 206 57.8
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 6.4e-51 204.9 122 81.1
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 1.1e-50 204.1 121 81.0
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 5.4e-50 201.8 122 80.3
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 2.5e-47 193.0 139 68.3
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 4.3e-47 192.2 125 76.0
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 4.3e-47 192.2 139 69.1
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 3.6e-46 189.1 196 58.2
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 1.5e-44 183.7 162 61.1
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 4.9e-43 178.7 177 59.3
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.4e-42 177.2 192 53.1
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 1.2e-41 174.1 105 78.1
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 2.0e-41 173.3 140 59.3
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 4.6e-41 172.2 210 52.4
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 6.0e-41 171.8 143 65.7
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 1.7e-40 170.2 167 54.5
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 6.6e-40 168.3 153 57.5
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.3e-37 159.8 116 69.0
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 5.8e-36 155.2 124 67.7
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 8.1e-30 134.8 92 69.6
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 2.5e-23 113.2 218 41.3
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 3.3e-23 112.8 146 44.5
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 2.1e-22 110.2 117 57.3
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 8.1e-22 108.2 149 50.3
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 5.1e-16 89.0 56 69.6
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 8.7e-16 88.2 62 64.5
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 1.3e-14 84.3 52 73.1
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 1.2e-12 77.8 48 72.9
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 3.4e-12 76.3 92 51.1
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 9.3e-10 68.2 63 63.5
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 5.6e-07 58.9 67 49.3


User provided reference genes

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