Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 2.0e-200 702.2 351 100.0
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 4.4e-163 578.2 333 84.7
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.3e-162 576.6 333 84.4
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 1.2e-160 570.1 332 82.8
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 1.6e-160 569.7 333 82.9
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 2.0e-160 569.3 330 83.9
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 2.9e-159 565.5 330 83.0
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 5.0e-159 564.7 332 81.3
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 5.5e-158 561.2 333 81.7
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 5.5e-158 561.2 333 81.7
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 1.2e-157 560.1 331 81.9
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 2.7e-157 558.9 333 81.7
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 3.6e-157 558.5 331 81.6
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 6.1e-157 557.8 331 81.6
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.0e-156 557.0 331 80.4
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 2.3e-156 555.8 330 78.8
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 2.3e-156 555.8 333 81.7
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 3.0e-156 555.4 331 81.6
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 4.0e-156 555.1 330 82.1
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 5.2e-156 554.7 330 80.3
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.2e-155 553.5 330 80.0
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 2.6e-155 552.4 329 80.2
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 3.3e-155 552.0 329 79.0
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 9.7e-155 550.4 332 81.0
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 6.3e-154 547.7 330 79.4
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 1.1e-153 547.0 333 77.8
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.4e-153 546.6 331 81.0
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 4.1e-153 545.0 330 79.1
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 5.3e-153 544.7 330 79.1
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 5.3e-153 544.7 330 79.7
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 9.1e-153 543.9 329 77.2
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 1.2e-152 543.5 329 79.0
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.6e-152 543.1 330 79.1
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 1.6e-152 543.1 326 79.1
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 4.5e-152 541.6 330 77.6
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 5.9e-152 541.2 325 78.5
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 7.7e-152 540.8 327 78.3
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 7.7e-152 540.8 330 78.5
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 2.9e-151 538.9 330 80.0
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 6.5e-151 537.7 329 77.2
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 8.5e-151 537.3 327 78.9
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 1.5e-150 536.6 332 77.1
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 1.5e-150 536.6 332 77.1
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 1.9e-150 536.2 330 77.6
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 1.9e-150 536.2 330 78.2
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 2.5e-150 535.8 327 78.6
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 2.5e-150 535.8 330 76.7
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 5.5e-150 534.6 328 78.0
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 7.2e-150 534.3 326 77.6
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 1.2e-149 533.5 329 77.8
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 1.2e-149 533.5 329 77.8
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 1.2e-149 533.5 334 76.0
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 1.2e-149 533.5 326 77.3
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 1.6e-149 533.1 329 78.1
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 1.6e-149 533.1 329 79.0
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.6e-149 533.1 330 77.9
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 2.1e-149 532.7 330 76.7
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 4.7e-149 531.6 330 77.9
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 8.0e-149 530.8 328 78.7
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 1.0e-148 530.4 329 77.5
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 3.0e-148 528.9 330 77.9
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 3.0e-148 528.9 330 76.4
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 5.2e-148 528.1 330 76.4
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 5.2e-148 528.1 330 75.5
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 5.2e-148 528.1 332 78.6
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 5.2e-148 528.1 326 77.0
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 6.8e-148 527.7 329 77.2
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 1.2e-147 526.9 342 72.5
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 1.2e-147 526.9 330 77.3
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 1.5e-147 526.6 324 79.0
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 3.4e-147 525.4 330 75.2
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 5.7e-147 524.6 329 76.9
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 7.5e-147 524.2 330 78.8
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 7.5e-147 524.2 329 76.6
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.7e-146 523.1 348 73.3
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.2e-146 522.7 330 77.0
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 2.2e-146 522.7 330 76.1
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 8.3e-146 520.8 331 77.0
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 4.1e-145 518.5 330 74.2
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 5.4e-145 518.1 313 78.6
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 5.4e-145 518.1 326 75.5
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 7.0e-145 517.7 331 77.6
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-144 516.5 331 75.5
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 2.7e-144 515.8 326 75.2
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 1.5e-142 510.0 402 65.7
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 5.5e-142 508.1 330 74.8
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.8e-140 503.1 361 69.0
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 6.8e-140 501.1 361 69.0
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 8.3e-138 494.2 331 72.2
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 5.4e-137 491.5 352 69.3
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.0e-135 487.3 330 72.1
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 7.3e-134 481.1 317 72.9
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.0e-127 459.1 330 68.5
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 4.7e-125 451.8 329 67.2
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 2.3e-119 433.0 285 74.0
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 5.1e-119 431.8 330 65.8
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 3.6e-117 425.6 329 64.4
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.5e-115 420.2 348 64.4
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 4.1e-113 412.1 333 61.6
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 9.2e-113 411.0 354 61.3
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.1e-112 409.8 286 72.4
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 1.0e-111 407.5 270 70.0
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 9.9e-107 391.0 328 59.5
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 3.8e-106 389.0 334 59.0
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 5.4e-105 385.2 225 79.6
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 5.8e-99 365.2 329 55.0
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.2e-98 363.2 223 78.9
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 3.8e-98 362.5 329 55.0
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.5e-94 349.7 334 52.1
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 4.3e-94 349.0 221 78.3
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 2.1e-93 346.7 329 51.7
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 3.6e-93 345.9 347 51.6
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-92 344.4 331 53.2
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 5.3e-92 342.0 329 51.1
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 4.5e-91 339.0 332 52.1
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 7.6e-91 338.2 329 51.7
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 2.2e-90 336.7 331 52.9
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-89 334.0 329 52.3
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 7.1e-89 331.6 329 51.4
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-88 330.5 332 52.1
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 4.6e-88 328.9 329 51.1
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 4.6e-88 328.9 331 51.1
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 2.3e-87 326.6 232 72.4
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 5.1e-87 325.5 329 51.7
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.8e-85 319.7 329 50.2
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 8.7e-79 298.1 330 47.3
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-77 293.9 329 46.8
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.8e-77 293.1 325 47.4
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 3.4e-75 286.2 329 46.2
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-70 271.2 264 51.9
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 2.0e-67 260.4 148 83.1
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.7e-61 240.7 144 80.6
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 5.3e-60 235.7 216 54.6
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 4.4e-54 216.1 179 64.2
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 4.8e-53 212.6 173 64.7
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 4.1e-52 209.5 139 71.9
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 1.5e-49 201.1 216 52.8
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.2e-48 198.0 326 39.6
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 5.2e-47 192.6 129 69.8
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-46 190.7 201 47.8
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 2.2e-45 187.2 176 50.0
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 3.5e-43 179.9 136 68.4
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.3e-42 177.9 105 80.0
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 1.8e-39 167.5 165 50.9
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 5.0e-34 149.4 368 31.2
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.3e-31 140.6 357 30.3
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 1.3e-26 124.8 79 75.9
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 3.3e-25 120.2 322 29.5
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 3.3e-25 120.2 346 28.3
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 1.6e-24 117.9 287 30.7
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 2.3e-23 114.0 98 55.1
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 7.5e-22 109.0 74 58.1
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.0e-19 100.9 365 27.1
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 5.0e-18 96.3 61 77.0
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 2.1e-16 90.9 335 29.9
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 4.7e-16 89.7 61 73.8
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.3e-15 87.4 60 73.3
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 2.0e-14 84.3 164 36.6
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 9.8e-14 82.0 45 82.2
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.9e-13 80.5 86 51.2
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 5.4e-12 76.3 53 69.8
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 7.0e-12 75.9 52 69.2
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 1.6e-11 74.7 54 64.8
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 1.6e-11 74.7 51 68.6
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 1.3e-10 71.6 92 45.7
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.8e-08 63.9 124 33.9
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.1e-07 60.5 139 31.7


User provided reference genes

Program Settings