Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1022 Acer truncatum HOM05D002759 ORTHO05D003290 3.2e-144 515.0 246 100.0
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 1.2e-130 469.9 279 83.9
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 5.8e-130 467.6 279 83.2
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 4.8e-100 368.2 277 66.4
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 1.4e-99 366.7 278 65.5
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 7.7e-98 360.9 277 65.0
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 2.2e-97 359.4 277 66.4
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 8.5e-97 357.5 277 66.1
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 2.3e-94 349.4 275 64.4
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 3.1e-91 339.0 278 61.9
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 5.3e-91 338.2 278 61.2
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 1.6e-90 336.7 278 60.4
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 7.7e-90 334.3 278 61.5
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 7.7e-90 334.3 278 61.5
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 2.2e-89 332.8 280 61.1
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 6.5e-89 331.3 278 60.4
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 8.5e-89 330.9 278 61.2
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 1.9e-88 329.7 278 59.4
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 9.4e-88 327.4 278 62.2
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 2.1e-87 326.2 277 60.3
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 2.7e-87 325.9 278 61.9
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 4.7e-87 325.1 279 59.1
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.4e-86 323.6 277 60.3
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.4e-86 323.6 277 60.3
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.4e-86 323.6 282 58.2
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 1.8e-86 323.2 290 59.3
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 1.8e-86 323.2 279 60.6
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.3e-86 322.8 278 57.9
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.3e-86 322.8 278 57.9
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 2.3e-86 322.8 282 57.8
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 5.2e-86 321.6 279 59.9
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 3.3e-85 318.9 277 59.2
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.3e-84 317.0 278 58.3
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 8.2e-84 314.3 276 56.5
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 1.4e-83 313.5 281 57.3
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 1.4e-83 313.5 277 58.8
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 1.8e-83 313.2 278 57.2
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 2.4e-83 312.8 278 57.2
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 2.4e-83 312.8 278 57.2
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 2.0e-82 309.7 259 62.2
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 2.7e-82 309.3 279 55.6
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 4.5e-82 308.5 279 57.3
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 2.9e-81 305.8 281 56.2
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 8.5e-81 304.3 278 53.6
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 1.9e-80 303.1 288 54.2
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 5.5e-80 301.6 288 55.2
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 7.2e-80 301.2 295 52.5
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 2.7e-79 299.3 288 54.2
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 3.6e-79 298.9 278 55.4
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.0e-78 297.4 277 56.0
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.4e-78 297.0 295 51.9
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.4e-78 297.0 278 55.4
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.8e-78 296.6 291 54.6
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 2.3e-78 296.2 284 54.9
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 6.8e-78 294.7 278 52.2
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 1.2e-77 293.9 285 54.7
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 2.6e-77 292.7 277 53.8
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 5.7e-77 291.6 286 54.5
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 5.7e-77 291.6 286 54.5
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 7.5e-77 291.2 284 54.6
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 1.3e-76 290.4 277 55.6
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 1.7e-76 290.0 286 54.5
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 1.7e-76 290.0 287 54.0
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 1.7e-76 290.0 286 54.5
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 1.7e-76 290.0 287 54.0
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 2.8e-76 289.3 278 55.8
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 4.8e-76 288.5 286 52.8
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 8.3e-76 287.7 287 53.7
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 8.3e-76 287.7 278 54.0
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.4e-75 287.0 280 52.9
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 3.1e-75 285.8 278 55.0
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 3.1e-75 285.8 277 53.8
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 4.1e-75 285.4 281 53.4
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 1.2e-74 283.9 284 53.5
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.6e-74 283.5 283 53.4
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 2.0e-74 283.1 279 53.0
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 3.5e-74 282.3 277 52.7
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.7e-73 280.0 279 54.1
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.7e-73 280.0 274 52.6
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.2e-73 279.6 296 52.0
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 5.0e-73 278.5 285 52.6
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 6.5e-73 278.1 277 53.1
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 6.5e-73 278.1 277 53.1
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 6.5e-73 278.1 277 53.1
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 2.5e-72 276.2 312 49.0
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 4.2e-72 275.4 277 52.3
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.6e-71 273.5 279 50.9
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 3.6e-71 272.3 277 52.0
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 3.6e-71 272.3 278 52.9
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 8.0e-71 271.2 280 52.1
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 8.0e-71 271.2 275 51.6
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.8e-70 270.0 272 52.6
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.2e-68 263.1 225 62.2
MD08G1226700 Malus domestica HOM05D002759 ORTHO05D003290 2.8e-68 262.7 253 56.9
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.9e-66 255.0 277 49.1
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 8.6e-65 251.1 206 61.7
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.5e-64 249.6 279 49.8
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 9.5e-64 247.7 237 56.5
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 8.0e-63 244.6 279 43.7
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 4.0e-62 242.3 274 47.8
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 1.2e-61 240.7 282 46.5
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 1.1e-59 234.2 296 45.6
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 1.8e-59 233.4 278 43.9
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 4.3e-56 222.2 274 42.7
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 5.6e-56 221.9 280 43.9
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.6e-56 221.9 207 58.5
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.6e-55 219.2 273 46.2
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.4e-54 217.2 258 46.5
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 3.2e-51 206.1 265 43.8
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 1.6e-50 203.8 274 41.2
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 2.1e-42 176.8 199 48.7
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 2.1e-42 176.8 298 35.6
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.7e-41 173.7 192 50.5
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 2.3e-41 173.3 313 33.9
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 3.3e-40 169.5 327 32.4
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 5.6e-40 168.7 274 37.2
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 1.1e-38 164.5 275 36.0
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 8.9e-38 161.4 289 37.0
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 9.9e-37 157.9 199 44.2
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.9e-36 156.4 195 42.6
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 6.4e-36 155.2 276 36.6
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 3.2e-35 152.9 128 60.2
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 7.8e-34 148.3 346 31.8
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 1.3e-33 147.5 276 35.5
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 1.7e-33 147.1 279 36.6
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 1.7e-33 147.1 279 36.6
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 2.3e-33 146.7 279 36.6
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 2.3e-33 146.7 279 36.6
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 2.1e-31 140.2 93 74.2
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 4.7e-31 139.0 284 34.9
SEGI_00066 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.9e-28 129.8 143 47.6
SEGI_24894 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.4e-27 126.7 140 47.1
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 3.5e-26 122.9 272 30.5
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 6.0e-26 122.1 131 52.7
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 6.0e-26 122.1 157 45.2
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 7.3e-24 115.2 78 69.2
COL.COLO4_16679 Corchorus olitorius HOM05D002759 ORTHO05D003290 9.6e-24 114.8 119 51.3
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 1.4e-22 110.9 84 64.3
vmacro01784 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 9.3e-19 98.2 108 51.9
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.3e-12 77.8 135 37.0
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 3.5e-10 69.7 149 35.6
RcHm_v2.0_Chr4g0428261 Rosa chinensis HOM05D002759 ORTHO05D003290 2.3e-09 67.0 103 38.8
C04p13010 Brassica napus HOM05D002759 ORTHO05D003290 1.1e-08 64.7 138 34.1
C04p13060 Brassica napus HOM05D002759 ORTHO05D003290 1.1e-08 64.7 138 34.1
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 2.1e-07 60.5 50 60.0
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 5.3e-06 55.8 97 39.2
CARHR254480 Cardamine hirsuta HOM05D002759 ORTHO05D003290 9.0e-06 55.1 29 79.3


User provided reference genes

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