Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 8.4e-79 297.0 151 100.0
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 6.7e-20 101.3 79 65.8
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 5.7e-19 98.2 71 76.1
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.4e-19 97.8 124 48.4
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.3e-18 97.1 125 48.0
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.8e-18 95.9 125 48.0
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.7e-18 95.5 77 66.2
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.8e-18 95.1 79 64.6
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-17 93.6 79 63.3
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 4.1e-17 92.0 71 67.6
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.3e-15 87.0 118 44.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.8e-15 85.5 120 44.2
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 5.0e-15 85.1 74 63.5
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.5e-15 84.7 120 43.3
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.1e-14 84.0 125 41.6
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.9e-14 83.2 123 43.1
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.9e-14 83.2 120 43.3
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.5e-14 82.8 77 54.5
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 2.5e-14 82.8 79 58.2
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.2e-14 82.4 120 42.5
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.2e-14 82.0 136 38.2
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.2e-14 82.0 77 58.4
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.5e-14 81.6 127 39.4
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 5.5e-14 81.6 70 62.9
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 5.5e-14 81.6 71 62.0
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.5e-14 81.6 120 42.5
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 5.5e-14 81.6 77 57.1
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 5.5e-14 81.6 121 40.5
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 7.2e-14 81.3 120 41.7
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 7.2e-14 81.3 132 39.4
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 9.4e-14 80.9 68 64.7
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 9.4e-14 80.9 136 36.0
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-13 80.5 124 41.1
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.2e-13 80.5 68 64.7
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.2e-13 80.5 68 64.7
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.2e-13 80.5 129 41.9
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 2.7e-13 79.3 80 51.2
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.6e-13 79.0 69 59.4
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 3.6e-13 79.0 77 57.1
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.1e-13 78.2 77 55.8
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 6.1e-13 78.2 80 58.8
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 6.1e-13 78.2 125 37.6
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 8.0e-13 77.8 77 53.2
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 8.0e-13 77.8 70 60.0
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 2.3e-12 76.3 67 61.2
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.3e-12 76.3 137 35.0
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.3e-12 76.3 137 35.0
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 2.3e-12 76.3 75 50.7
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.0e-12 75.5 132 38.6
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 4.0e-12 75.5 77 51.9
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 4.0e-12 75.5 77 51.9
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 5.2e-12 75.1 75 53.3
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 5.2e-12 75.1 115 37.4
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 6.7e-12 74.7 126 44.4
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 6.7e-12 74.7 63 60.3
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 8.8e-12 74.3 126 36.5
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.2e-11 73.9 76 50.0
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.0e-11 73.2 65 61.5
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.6e-11 72.8 69 56.5
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.6e-11 72.8 69 56.5
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.6e-11 72.8 67 61.2
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 3.3e-11 72.4 69 58.0
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.4e-11 72.0 66 57.6
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.4e-11 72.0 67 56.7
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 5.7e-11 71.6 66 56.1
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 7.5e-11 71.2 70 52.9
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.7e-10 70.1 69 52.2
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 2.2e-10 69.7 79 46.8
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.2e-10 69.7 68 54.4
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.8e-10 69.3 79 46.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.8e-10 69.3 79 46.8
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.8e-10 69.3 79 46.8
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.8e-10 69.3 68 61.8
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.7e-10 68.9 74 48.6
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.8e-10 68.6 69 53.6
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 4.8e-10 68.6 70 55.7
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 6.3e-10 68.2 70 50.0
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 8.2e-10 67.8 63 54.0
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 8.2e-10 67.8 63 54.0
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 8.2e-10 67.8 120 37.5
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 8.2e-10 67.8 120 37.5
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.1e-09 67.4 118 36.4
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 1.1e-09 67.4 65 60.0
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-09 67.4 74 47.3
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.4e-09 67.0 116 33.6
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.8e-09 66.6 67 50.7
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.8e-09 66.6 68 55.9
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.8e-09 66.6 66 59.1
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.1e-09 65.9 67 52.2
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 3.1e-09 65.9 116 34.5
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 3.1e-09 65.9 80 47.5
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 4.1e-09 65.5 116 32.8
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 4.1e-09 65.5 70 48.6
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 5.3e-09 65.1 69 49.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 5.3e-09 65.1 68 52.9
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.0e-09 64.7 71 49.3
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.0e-09 64.7 71 49.3
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 9.1e-09 64.3 116 31.0
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.0e-08 63.2 66 53.0
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 2.0e-08 63.2 116 33.6
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.7e-08 62.8 113 36.3
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 2.7e-08 62.8 67 47.8
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.7e-08 62.8 69 47.8
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.7e-08 62.8 64 50.0
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 3.5e-08 62.4 63 52.4
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.5e-08 62.4 126 29.4
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 5.9e-08 61.6 69 43.5
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 5.9e-08 61.6 116 33.6
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.0e-07 60.8 69 55.1
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 6.5e-07 58.2 126 31.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-06 57.4 50 58.0
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 3.2e-06 55.8 59 45.8
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 5.5e-06 55.1 65 44.6
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 7.2e-06 54.7 68 42.6


User provided reference genes

Program Settings