Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.997 Acer truncatum HOM05D004658 ORTHO05D005927 0.0e+00 1496.1 728 100.0
Thecc.01G313700 Theobroma cacao HOM05D004658 ORTHO05D005927 0.0e+00 1190.3 742 79.5
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 0.0e+00 1186.4 729 79.6
Sabra14G0089400 Salix brachista HOM05D004658 ORTHO05D005927 0.0e+00 1185.6 725 80.3
Potri.014G120600 Populus trichocarpa HOM05D004658 ORTHO05D005927 0.0e+00 1183.3 727 79.4
Haze_05044 Corylus avellana HOM05D004658 ORTHO05D005927 0.0e+00 1176.4 745 78.3
Gorai.008G139300 Gossypium raimondii HOM05D004658 ORTHO05D005927 0.0e+00 1171.4 728 78.8
Potri.002G196000 Populus trichocarpa HOM05D004658 ORTHO05D005927 0.0e+00 1171.4 728 79.7
Gohir.D12G128500 Gossypium hirsutum HOM05D004658 ORTHO05D005927 0.0e+00 1171.0 724 78.9
Actinidia17899 Actinidia chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1169.5 733 77.9
CiPaw.07G117600 Carya illinoinensis HOM05D004658 ORTHO05D005927 0.0e+00 1168.3 738 79.0
Cpa.g.sc18.45 Carica papaya HOM05D004658 ORTHO05D005927 0.0e+00 1166.8 736 78.1
QL12p019917 Quercus lobata HOM05D004658 ORTHO05D005927 0.0e+00 1166.4 744 76.9
GSVIVG01028121001 Vitis vinifera HOM05D004658 ORTHO05D005927 0.0e+00 1164.8 670 83.3
TAR362G0927 Trochodendron aralioides HOM05D004658 ORTHO05D005927 0.0e+00 1163.3 673 84.0
Nn3g21693 Nelumbo nucifera HOM05D004658 ORTHO05D005927 0.0e+00 1158.7 672 83.2
Ca_09212_v3 Cicer arietinum L. HOM05D004658 ORTHO05D005927 0.0e+00 1154.4 728 76.1
TWI18G0165 Tripterygium wilfordii HOM05D004658 ORTHO05D005927 0.0e+00 1154.0 732 78.6
Cfa005797 Carpinus fangiana HOM05D004658 ORTHO05D005927 0.0e+00 1152.5 734 78.5
CSS0014890 Camellia sinensis var. sinensis HOM05D004658 ORTHO05D005927 0.0e+00 1151.3 738 75.6
Duzib133G0239 Durio zibethinus HOM05D004658 ORTHO05D005927 0.0e+00 1148.3 730 77.5
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 0.0e+00 1144.0 726 77.0
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 0.0e+00 1143.3 670 82.2
MBI18_g17316_MAGBIO Magnolia biondii HOM05D004658 ORTHO05D005927 0.0e+00 1142.9 731 78.2
PSO210G5154 Papaver somniferum HOM05D004658 ORTHO05D005927 0.0e+00 1142.1 740 77.6
Aqoxy2G02766 Aquilegia oxysepala HOM05D004658 ORTHO05D005927 0.0e+00 1141.3 747 75.2
CANSAT11G0445 Cannabis sativa HOM05D004658 ORTHO05D005927 0.0e+00 1140.9 733 76.3
Eucgr.H01015 Eucalyptus grandis HOM05D004658 ORTHO05D005927 0.0e+00 1139.0 730 77.0
FvH4_5g39170 Fragaria vesca HOM05D004658 ORTHO05D005927 0.0e+00 1138.6 729 75.4
MD03G1294700 Malus domestica HOM05D004658 ORTHO05D005927 0.0e+00 1137.9 736 75.8
RcHm_v2.0_Chr7g0241431 Rosa chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1137.1 727 75.5
Lj2C1205T10 Lonicera japonica HOM05D004658 ORTHO05D005927 0.0e+00 1135.2 674 80.0
PSO761G0108 Papaver somniferum HOM05D004658 ORTHO05D005927 0.0e+00 1131.3 738 77.0
COL.COLO4_23230 Corchorus olitorius HOM05D004658 ORTHO05D005927 0.0e+00 1129.4 651 82.6
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 0.0e+00 1129.0 734 76.6
FAN04G3181 Fragaria x ananassa HOM05D004658 ORTHO05D005927 0.0e+00 1127.1 742 75.2
Medtr7g109530 Medicago truncatula HOM05D004658 ORTHO05D005927 0.0e+00 1126.3 734 74.8
Sc17g0000440 Simmondsia chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1124.0 733 74.1
AT2G47390 Arabidopsis thaliana HOM05D004658 ORTHO05D005927 0.0e+00 1122.1 736 76.2
C04p00470 Brassica napus HOM05D004658 ORTHO05D005927 0.0e+00 1121.7 727 75.5
THA.LOC104817457 Tarenaya hassleriana HOM05D004658 ORTHO05D005927 0.0e+00 1121.7 730 74.9
Sopen01g031220 Solanum pennellii HOM05D004658 ORTHO05D005927 0.0e+00 1121.3 731 74.1
FAN08G2138 Fragaria x ananassa HOM05D004658 ORTHO05D005927 0.0e+00 1120.5 725 75.6
CARHR142780 Cardamine hirsuta HOM05D004658 ORTHO05D005927 0.0e+00 1119.4 733 75.4
Rhsim13G0005000 Rhododendron simsii HOM05D004658 ORTHO05D005927 0.0e+00 1119.0 781 71.7
Sp4g29330 Schrenkiella parvula HOM05D004658 ORTHO05D005927 0.0e+00 1119.0 734 76.0
Psat3g019800 Pisum sativum HOM05D004658 ORTHO05D005927 0.0e+00 1117.8 732 75.1
Solyc01g079450.3 Solanum lycopersicum HOM05D004658 ORTHO05D005927 0.0e+00 1117.1 731 73.7
TAR633G2306 Trochodendron aralioides HOM05D004658 ORTHO05D005927 0.0e+00 1116.7 670 81.5
BcaC02g06972 Brassica carinata HOM05D004658 ORTHO05D005927 0.0e+00 1115.9 729 75.9
Lj2A1206G24 Lonicera japonica HOM05D004658 ORTHO05D005927 0.0e+00 1112.8 719 75.2
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 0.0e+00 1111.3 737 75.4
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 0.0e+00 1110.9 727 75.4
C04p72760 Brassica napus HOM05D004658 ORTHO05D005927 0.0e+00 1110.1 730 75.5
Phvul.001G213000 Phaseolus vulgaris HOM05D004658 ORTHO05D005927 0.0e+00 1110.1 727 73.6
Lj1g0019327 Lotus japonicus HOM05D004658 ORTHO05D005927 0.0e+00 1109.0 729 74.1
vmacro02405 Vaccinium macrocarpon HOM05D004658 ORTHO05D005927 0.0e+00 1109.0 787 71.3
VMungo1383G2746 Vigna mungo HOM05D004658 ORTHO05D005927 0.0e+00 1108.2 727 73.0
TPR.G4133 Trifolium pratense HOM05D004658 ORTHO05D005927 0.0e+00 1107.8 662 79.5
MSTRG.18101 Avicennia marina HOM05D004658 ORTHO05D005927 0.0e+00 1104.0 731 74.0
Glyma.03G219500 Glycine max HOM05D004658 ORTHO05D005927 0.0e+00 1104.0 729 74.2
Cc01_g21440 Coffea canephora HOM05D004658 ORTHO05D005927 0.0e+00 1102.0 668 78.7
Aa31LG1G28690 Aethionema arabicum HOM05D004658 ORTHO05D005927 0.0e+00 1101.7 743 73.9
Lalb_Chr04g0259961 Lupinus albus HOM05D004658 ORTHO05D005927 0.0e+00 1101.3 733 73.9
arahy.Tifrunner.gnm1.ann1.T5GBA6 Arachis hypogaea HOM05D004658 ORTHO05D005927 0.0e+00 1100.9 723 73.4
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 0.0e+00 1099.7 720 75.6
FAN18G2042 Fragaria x ananassa HOM05D004658 ORTHO05D005927 0.0e+00 1099.7 671 78.4
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 0.0e+00 1097.8 719 75.5
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 0.0e+00 1095.1 720 75.1
ClCG09G005080 Citrullus lanatus HOM05D004658 ORTHO05D005927 0.0e+00 1093.2 718 73.8
arahy.Tifrunner.gnm1.ann1.04PXL7 Arachis hypogaea HOM05D004658 ORTHO05D005927 0.0e+00 1092.8 723 73.4
MELO3C015923.2 Cucumis melo HOM05D004658 ORTHO05D005927 0.0e+00 1089.3 716 73.7
HanXRQChr04g0106121 Helianthus annuus HOM05D004658 ORTHO05D005927 0.0e+00 1084.7 724 72.2
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 0.0e+00 1081.2 649 79.2
Sed0028068 Sechium edule HOM05D004658 ORTHO05D005927 0.0e+00 1078.9 723 72.3
CsaV3_7G029970 Cucumis sativus L. HOM05D004658 ORTHO05D005927 0.0e+00 1076.6 725 72.6
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 0.0e+00 1076.2 724 72.9
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 5.0e-312 1074.3 730 72.3
Lalb_Chr15g0078141 Lupinus albus HOM05D004658 ORTHO05D005927 1.0e-311 1072.8 649 79.0
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 1.5e-311 1072.4 735 71.0
Ah.02g112260 Amaranthus hybridus HOM05D004658 ORTHO05D005927 4.5e-311 1070.8 729 71.6
Glyma.19G216400 Glycine max HOM05D004658 ORTHO05D005927 6.0e-311 1070.5 727 72.2
Migut.D00082 Erythranthe guttata HOM05D004658 ORTHO05D005927 2.2e-310 1068.5 729 71.5
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 2.9e-310 1068.1 653 78.1
Sed0011993 Sechium edule HOM05D004658 ORTHO05D005927 4.9e-310 1067.4 723 73.0
ATR0796G129 Amborella trichopoda HOM05D004658 ORTHO05D005927 1.1e-309 1066.2 661 78.4
Hund09631 Selenicereus undatus HOM05D004658 ORTHO05D005927 5.4e-309 1063.9 740 70.9
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 6.0e-308 1060.4 714 71.6
AUR62011802 Chenopodium quinoa HOM05D004658 ORTHO05D005927 2.5e-306 1055.0 734 71.3
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 5.6e-306 1053.9 670 73.7
Os03g0307100 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 1.3e-305 1052.7 617 79.7
Duzib138G1936 Durio zibethinus HOM05D004658 ORTHO05D005927 1.6e-305 1052.4 730 73.2
SalBow3G1126 Salvia bowleyana HOM05D004658 ORTHO05D005927 2.8e-305 1051.6 671 73.9
Zm00001eb014640 Zea mays HOM05D004658 ORTHO05D005927 1.2e-303 1046.2 617 79.3
CDE02G1789 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 5.8e-303 1043.9 676 75.4
CDE08G1239 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 7.9e-300 1033.5 609 80.3
Cfa005796 Carpinus fangiana HOM05D004658 ORTHO05D005927 7.4e-290 1000.3 655 74.2
Gohir.A12G124600 Gossypium hirsutum HOM05D004658 ORTHO05D005927 1.8e-288 995.7 561 83.6
SGA_v2.0_scaffold334G49068 Striga asiatica HOM05D004658 ORTHO05D005927 1.4e-285 986.1 667 70.5
RcHm_v2.0_Chr7g0241201 Rosa chinensis HOM05D004658 ORTHO05D005927 1.6e-284 982.6 560 81.8
TPR.G4093 Trifolium pratense HOM05D004658 ORTHO05D005927 2.7e-284 981.9 578 78.0
SHI28963 Sapria himalayana HOM05D004658 ORTHO05D005927 3.5e-284 981.5 661 70.5
HPP92_008950 Vanilla planifolia HOM05D004658 ORTHO05D005927 4.6e-284 981.1 716 68.4
Oeu008475.1 Olea europaea HOM05D004658 ORTHO05D005927 2.9e-278 961.8 737 66.4
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 8.5e-278 960.3 621 72.9
Ciclev10000356m.g Citrus clementina HOM05D004658 ORTHO05D005927 4.2e-269 931.4 605 72.7
Haze_05045 Corylus avellana HOM05D004658 ORTHO05D005927 7.9e-268 927.2 626 73.5
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 1.3e-257 893.3 663 65.3
Mapoly0032s0164 Marchantia polymorpha HOM05D004658 ORTHO05D005927 8.2e-257 890.6 683 63.0
BolC4t28757H Brassica oleracea HOM05D004658 ORTHO05D005927 1.2e-255 886.7 599 73.3
Pp3c6_17840 Physcomitrium patens HOM05D004658 ORTHO05D005927 2.7e-252 875.5 630 64.6
Haze_05046 Corylus avellana HOM05D004658 ORTHO05D005927 4.4e-250 868.2 638 68.7
Pp3c25_7720 Physcomitrium patens HOM05D004658 ORTHO05D005927 2.1e-244 849.4 620 63.7
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 1.0e-238 830.5 736 59.5
SMO365G0028 Selaginella moellendorffii HOM05D004658 ORTHO05D005927 3.8e-238 828.6 621 63.1
AagrBONN_evm.TU.Sc2ySwM_228.2732 Anthoceros agrestis HOM05D004658 ORTHO05D005927 1.1e-237 827.0 680 59.3
Pp3c23_15570 Physcomitrium patens HOM05D004658 ORTHO05D005927 3.4e-210 735.7 636 55.2
Haze_04782 Corylus avellana HOM05D004658 ORTHO05D005927 5.8e-210 734.9 591 63.1
Dinv33118 Davidia involucrata HOM05D004658 ORTHO05D005927 1.1e-205 720.7 381 87.7
Nitab4.5_0008277g0040 Nicotiana tabacum HOM05D004658 ORTHO05D005927 9.0e-187 657.9 472 68.6
FAN13G1327 Fragaria x ananassa HOM05D004658 ORTHO05D005927 3.0e-182 642.9 453 70.4
MD00G1179100 Malus domestica HOM05D004658 ORTHO05D005927 1.7e-169 600.5 433 70.7
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 2.2e-156 557.0 721 41.2
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 3.4e-154 549.7 650 44.0
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 8.8e-150 535.0 650 44.8
MD00G1179200 Malus domestica HOM05D004658 ORTHO05D005927 1.2e-146 524.6 308 80.8
CBR_g25724 Chara braunii HOM05D004658 ORTHO05D000184 1.1e-110 405.2 384 51.3
Actinidia21401 Actinidia chinensis HOM05D004658 ORTHO05D005927 5.0e-105 386.3 205 85.4
Mapoly0049s0016 Marchantia polymorpha HOM05D004658 ORTHO05D005927 5.4e-99 366.3 252 68.3
RcHm_v2.0_Chr5g0055721 Rosa chinensis HOM05D004658 ORTHO05D005927 9.2e-99 365.5 250 69.6
ECA232G2110 Erigeron canadensis HOM05D004658 ORTHO05D005927 5.1e-97 359.8 394 49.5
Mapoly1060s0001 Marchantia polymorpha HOM05D004658 ORTHO05D005927 8.1e-79 299.3 209 66.0
CBR_g25720 Chara braunii HOM05D005350 ORTHO05D008838 8.4e-76 289.3 213 66.2
Mapoly0893s0002 Marchantia polymorpha HOM05D004658 ORTHO05D005927 5.6e-72 276.6 198 65.2
Dinv33117 Davidia involucrata HOM05D004658 ORTHO05D005927 1.1e-64 252.3 221 61.5
Lj1C17G9 Lonicera japonica HOM05D004658 ORTHO05D005927 3.3e-64 250.8 264 53.4
SMO200G0105 Selaginella moellendorffii HOM05D004658 ORTHO05D000832 2.8e-47 194.5 305 40.0
Nn6g32423 Nelumbo nucifera HOM05D004658 ORTHO05D005927 8.2e-39 166.4 100 80.0
RcHm_v2.0_Chr5g0055731 Rosa chinensis HOM05D004658 ORTHO05D005927 3.8e-36 157.5 99 73.7
Os07g0689400 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 6.5e-36 156.8 123 59.3
SEGI_04992 Sequoiadendron giganteum HOM05D004658 ORTHO05D005927 8.5e-28 129.8 71 81.7
Nn3g19817 Nelumbo nucifera HOM05D004658 ORTHO05D005927 1.1e-22 112.8 61 88.5
Actinidia21402 Actinidia chinensis HOM05D004658 ORTHO05D054698 1.1e-11 76.3 53 66.0


User provided reference genes

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