Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 2.3e-287 991.5 487 100.0
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 3.3e-217 758.4 483 78.3
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 3.1e-215 751.9 479 77.2
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.2e-213 745.7 479 76.8
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 8.3e-213 743.8 484 76.2
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 4.6e-211 738.0 491 76.2
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.0e-210 736.9 479 75.4
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 2.5e-209 732.3 480 74.8
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.2e-208 729.9 487 75.2
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.7e-208 728.0 485 76.1
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 5.8e-206 721.1 481 75.7
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.3e-205 719.9 493 73.4
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.6e-203 713.0 477 75.9
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 3.5e-203 711.8 478 74.3
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.3e-202 709.9 492 72.8
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 6.6e-202 707.6 492 72.4
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 2.5e-201 705.7 485 73.0
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 4.3e-201 704.9 484 72.5
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 8.1e-200 700.7 485 72.8
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 1.4e-199 699.9 488 72.3
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.4e-199 699.9 481 72.3
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 4.0e-199 698.4 486 70.6
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 2.0e-198 696.0 484 72.1
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.6e-198 695.7 484 72.1
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 3.4e-198 695.3 481 72.1
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 4.4e-198 694.9 487 72.1
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 9.9e-198 693.7 480 72.5
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 2.2e-197 692.6 498 70.5
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.4e-196 689.9 483 72.0
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.4e-196 689.9 482 72.2
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.9e-193 679.5 486 70.4
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.3e-193 678.7 479 70.1
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 7.3e-193 677.6 484 70.5
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 1.6e-192 676.4 478 71.5
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 3.6e-192 675.2 495 70.5
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 4.0e-191 671.8 479 71.4
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.7e-189 666.4 483 70.0
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 6.4e-189 664.5 522 67.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.4e-188 662.5 481 71.1
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 9.3e-188 660.6 481 70.7
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.0e-186 657.1 481 70.3
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 1.6e-184 649.8 480 68.8
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 2.8e-184 649.0 471 69.6
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 8.1e-184 647.5 475 69.5
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 1.8e-183 646.4 475 69.9
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.3e-181 640.2 470 67.9
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 2.2e-181 639.4 486 68.1
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.2e-181 639.4 487 67.4
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.4e-180 636.0 462 68.6
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.3e-180 634.0 470 69.4
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.1e-179 632.9 478 66.5
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.8e-178 629.8 478 66.9
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 3.9e-178 628.6 478 66.5
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 3.9e-178 628.6 478 66.5
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 5.1e-178 628.2 477 66.0
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.1e-177 627.1 481 66.9
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.3e-176 623.6 490 65.9
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.1e-176 622.9 478 66.1
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.1e-176 622.9 483 65.6
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 2.8e-176 622.5 483 65.4
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 3.7e-176 622.1 492 64.6
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 3.7e-176 622.1 477 67.7
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 8.1e-176 620.9 477 65.4
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 8.1e-176 620.9 500 63.4
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 5.3e-175 618.2 444 69.8
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.2e-174 617.1 478 66.5
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 7.6e-174 614.4 461 69.0
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.0e-173 614.0 471 66.9
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.4e-172 610.1 467 66.8
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 7.1e-172 607.8 527 59.6
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 7.9e-171 604.4 462 65.8
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 7.9e-171 604.4 481 66.3
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.1e-167 594.0 497 63.0
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 4.2e-164 582.0 475 64.2
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 2.1e-163 579.7 478 63.2
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 4.6e-163 578.6 472 62.7
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.0e-162 577.4 491 61.3
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.0e-162 575.9 490 62.0
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 9.7e-161 570.9 477 62.1
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 2.2e-160 569.7 493 62.3
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 3.4e-158 562.4 480 61.0
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 7.7e-158 561.2 471 62.8
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.3e-157 560.5 402 68.9
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 5.0e-157 558.5 372 74.5
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 6.1e-155 551.6 465 61.9
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 5.7e-153 545.0 478 59.6
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.4e-151 540.4 491 59.3
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.0e-149 534.3 478 59.6
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.9e-148 530.0 561 51.9
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 2.5e-148 529.6 471 60.5
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 3.6e-147 525.8 403 67.0
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 8.8e-146 521.2 532 55.6
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 2.6e-142 509.6 383 67.4
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.7e-141 506.9 276 84.8
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.5e-140 503.1 472 59.5
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 4.2e-140 502.3 403 66.0
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.0e-138 497.7 484 54.8
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 2.6e-137 493.0 480 56.0
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.6e-137 493.0 448 60.0
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 2.6e-137 493.0 504 57.9
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 7.5e-137 491.5 506 51.8
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 4.8e-136 488.8 416 63.7
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 6.3e-136 488.4 841 38.0
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 2.8e-128 463.0 540 48.3
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 5.4e-127 458.8 474 51.5
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.0e-126 456.8 454 55.5
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 4.5e-126 455.7 267 80.5
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 2.8e-120 436.4 505 47.7
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 5.0e-117 425.6 469 51.2
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 3.3e-116 422.9 346 63.9
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 2.6e-113 413.3 383 60.1
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 6.4e-112 408.7 476 50.6
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 7.8e-94 348.6 430 51.2
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-93 345.9 640 36.9
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 2.8e-91 340.1 226 69.5
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 2.1e-83 313.9 347 52.2
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.0e-77 293.5 191 71.2
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 6.2e-75 285.8 472 37.3
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 1.5e-73 281.2 271 51.7
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.8e-64 250.0 387 42.6
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 8.4e-64 248.8 137 85.4
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 1.9e-63 247.7 281 43.8
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 9.6e-60 235.3 124 87.9
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 2.4e-58 230.7 338 39.3
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.9e-53 213.4 297 40.4
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 4.8e-51 206.5 113 84.1
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 5.7e-44 183.0 109 77.1
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.1e-34 152.1 86 82.6
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 7.0e-26 122.9 74 79.7
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 2.1e-22 111.3 60 80.0
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 8.8e-21 105.9 81 63.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 2.5e-15 87.8 71 53.5
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.4e-13 82.0 41 85.4
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 3.0e-13 80.9 53 75.5
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 9.8e-12 75.9 69 55.1
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 6.3e-11 73.2 94 45.7
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 1.1e-10 72.4 118 39.0
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 2.4e-10 71.2 49 69.4
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 2.4e-10 71.2 72 55.6
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 3.1e-10 70.9 45 75.6


User provided reference genes

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