Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 1.9e-240 835.5 439 100.0
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 1.4e-171 606.7 439 73.1
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 6.2e-159 564.7 440 68.4
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 4.0e-158 562.0 437 68.0
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 1.0e-156 557.4 440 68.4
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.4e-155 553.5 439 66.5
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 2.5e-155 552.7 439 66.7
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 6.1e-154 548.1 440 65.7
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 1.9e-152 543.1 441 66.2
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 1.4e-150 537.0 432 65.0
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 1.4e-150 537.0 432 65.0
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 3.8e-148 528.9 439 64.5
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 1.4e-147 526.9 444 64.2
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 1.9e-147 526.6 421 65.8
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 2.5e-147 526.2 442 63.8
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 5.5e-147 525.0 417 66.9
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 4.6e-146 521.9 437 64.1
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 1.4e-145 520.4 442 63.1
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 3.0e-145 519.2 418 65.6
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 8.8e-145 517.7 406 66.5
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 9.7e-144 514.2 434 63.6
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 2.2e-143 513.1 443 63.0
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 1.1e-142 510.8 417 63.3
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 1.8e-142 510.0 409 65.3
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 1.5e-141 506.9 436 62.2
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 2.0e-141 506.5 415 64.3
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 5.0e-140 501.9 439 62.2
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 1.2e-138 497.3 409 65.0
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 2.3e-137 493.0 425 61.2
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 3.9e-137 492.3 412 61.9
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 5.1e-137 491.9 438 61.2
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 1.3e-135 487.3 387 65.1
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 6.3e-135 485.0 439 58.8
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 4.1e-134 482.3 441 61.7
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 2.6e-133 479.6 436 60.8
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.5e-133 479.2 439 58.1
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 5.9e-133 478.4 443 58.9
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 3.8e-132 475.7 439 57.6
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 1.5e-131 473.8 439 57.4
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 2.5e-131 473.0 439 57.4
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 7.2e-131 471.5 434 58.1
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 1.6e-130 470.3 439 57.4
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 2.7e-130 469.5 439 57.9
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 8.0e-130 468.0 439 56.0
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 6.7e-129 464.9 443 59.1
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 1.5e-128 463.8 439 57.2
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 3.3e-128 462.6 411 59.1
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 7.4e-128 461.5 439 56.5
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 1.7e-127 460.3 439 56.5
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 8.2e-127 458.0 407 59.7
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 3.1e-126 456.1 435 55.9
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 5.9e-125 451.8 407 58.2
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 1.7e-124 450.3 396 60.1
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 1.7e-124 450.3 434 54.8
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 6.5e-124 448.4 369 61.8
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 1.1e-123 447.6 433 56.4
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 1.4e-121 440.7 429 56.6
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 1.4e-118 430.6 439 54.9
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 1.4e-118 430.6 353 66.3
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.7e-117 426.4 441 53.7
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 5.9e-117 425.2 428 54.0
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 7.7e-117 424.9 436 54.8
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 1.3e-116 424.1 439 52.2
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 1.7e-116 423.7 441 53.7
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.1e-115 421.0 436 54.8
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 6.8e-113 411.8 437 52.6
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 2.0e-112 410.2 376 54.0
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 7.5e-112 408.3 440 52.0
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 9.8e-112 407.9 417 52.0
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 2.8e-111 406.4 355 66.8
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 4.8e-111 405.6 429 54.3
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.1e-110 404.4 299 68.6
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 2.4e-110 403.3 469 49.5
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.7e-108 397.1 416 53.4
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 1.7e-108 397.1 348 60.3
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 6.6e-108 395.2 415 54.5
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 1.1e-107 394.4 433 52.9
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 3.3e-107 392.9 406 52.2
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 7.2e-107 391.7 404 54.5
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.2e-106 391.0 416 53.1
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 4.7e-106 389.0 421 51.3
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 1.7e-100 370.5 435 49.4
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 1.1e-99 367.9 421 49.4
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 2.5e-99 366.7 388 51.5
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 2.8e-98 363.2 344 61.6
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 6.8e-97 358.6 435 46.2
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 3.5e-93 346.3 440 45.2
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 1.0e-92 344.7 373 50.9
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 1.1e-91 341.3 297 63.3
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 1.5e-91 340.9 355 58.6
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 7.5e-88 328.6 428 45.6
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 2.1e-85 320.5 435 47.6
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 2.8e-74 283.5 404 41.8
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 4.0e-73 279.6 424 37.0
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 4.9e-71 272.7 392 41.6
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 5.6e-67 259.2 416 35.6
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 1.8e-65 254.2 236 55.5
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 2.1e-61 240.7 394 36.3
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.9e-59 234.2 203 55.7
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 4.0e-49 199.9 197 50.8
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 5.5e-46 189.5 222 53.2
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 4.5e-32 143.3 197 42.6
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 5.7e-27 126.3 85 65.9
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.3e-23 115.2 121 49.6
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 1.1e-17 95.5 303 28.1
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.1e-14 85.5 65 53.8
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.9e-14 84.7 57 59.6
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.2e-13 82.0 65 55.4
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 8.8e-12 75.9 87 54.0
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.8e-09 68.2 97 46.4
SEGI_05800 Sequoiadendron giganteum HOM05D001726 ORTHO05D001761 4.2e-06 57.0 175 27.4
RcHm_v2.0_Chr7g0204861 Rosa chinensis HOM05D001726 ORTHO05D001761 5.5e-06 56.6 155 25.8


User provided reference genes

Program Settings