Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.821 Acer truncatum HOM05D003741 ORTHO05D004247 1.0e-70 270.0 138 100.0
Atru.chr5.823 Acer truncatum HOM05D003741 ORTHO05D004247 4.5e-55 218.0 124 87.1
Gorai.007G055400 Gossypium raimondii HOM05D003741 ORTHO05D004247 8.0e-44 180.6 122 72.1
Gohir.D11G050925 Gossypium hirsutum HOM05D003741 ORTHO05D004247 3.0e-43 178.7 122 73.0
Gohir.D11G051000 Gossypium hirsutum HOM05D003741 ORTHO05D004247 3.0e-43 178.7 122 73.0
Duzib138G0796 Durio zibethinus HOM05D003741 ORTHO05D004247 6.8e-43 177.6 122 72.1
Potri.002G184201 Populus trichocarpa HOM05D003741 ORTHO05D004247 9.8e-42 173.7 124 71.8
Sabra02G0131600 Salix brachista HOM05D003741 ORTHO05D004247 2.2e-41 172.6 126 69.8
Duzib133G0965 Durio zibethinus HOM05D003741 ORTHO05D004247 1.1e-40 170.2 118 70.3
Gorai.007G115600 Gossypium raimondii HOM05D003741 ORTHO05D004247 1.1e-40 170.2 122 68.9
Thecc.01G328700 Theobroma cacao HOM05D003741 ORTHO05D004247 1.1e-40 170.2 122 69.7
COL.COLO4_23087 Corchorus olitorius HOM05D003741 ORTHO05D004247 3.1e-40 168.7 122 67.2
Gohir.A11G103300 Gossypium hirsutum HOM05D003741 ORTHO05D004247 3.1e-40 168.7 122 68.0
Gohir.D11G107766 Gossypium hirsutum HOM05D003741 ORTHO05D004247 3.1e-40 168.7 122 68.0
Cpa.g.sc57.55 Carica papaya HOM05D003741 ORTHO05D004247 5.4e-40 167.9 122 68.9
Potri.014G109801 Populus trichocarpa HOM05D003741 ORTHO05D004247 9.1e-40 167.2 122 70.5
TWI23G0544 Tripterygium wilfordii HOM05D003741 ORTHO05D004247 1.2e-39 166.8 123 67.5
Ciclev10020859m.g Citrus clementina HOM05D003741 ORTHO05D004247 1.6e-39 166.4 122 72.1
Manes.05G006300 Manihot esculenta HOM05D003741 ORTHO05D004247 2.0e-39 166.0 118 70.3
Prupe.3G000200 Prunus persica HOM05D003741 ORTHO05D004247 1.0e-38 163.7 124 66.1
MD17G1285700 Malus domestica HOM05D003741 ORTHO05D004247 1.7e-38 162.9 116 69.0
RcHm_v2.0_Chr3g0485051 Rosa chinensis HOM05D003741 ORTHO05D004247 1.1e-37 160.2 116 66.4
Sabra02G0131500 Salix brachista HOM05D003741 ORTHO05D004247 1.1e-37 160.2 108 71.3
GSVIVG01028272001 Vitis vinifera HOM05D003741 ORTHO05D004247 1.9e-37 159.5 133 63.2
FAN28G0860 Fragaria x ananassa HOM05D003741 ORTHO05D004247 4.2e-37 158.3 121 62.8
Haze_05174 Corylus avellana HOM05D003741 ORTHO05D004247 5.5e-37 157.9 123 63.4
arahy.Tifrunner.gnm1.ann1.8L6AK6 Arachis hypogaea HOM05D003741 ORTHO05D004247 9.4e-37 157.1 123 65.0
Potri.002G184300 Populus trichocarpa HOM05D003741 ORTHO05D004247 9.4e-37 157.1 119 67.2
FvH4_1g25910 Fragaria vesca HOM05D003741 ORTHO05D004247 1.6e-36 156.4 116 64.7
BolC9t53059H Brassica oleracea HOM05D003741 ORTHO05D004247 2.1e-36 156.0 127 61.4
arahy.Tifrunner.gnm1.ann1.00ZDTM Arachis hypogaea HOM05D003741 ORTHO05D004247 2.7e-36 155.6 94 77.7
THA.LOC104825920 Tarenaya hassleriana HOM05D003741 ORTHO05D004247 2.7e-36 155.6 118 66.9
Haze_05173 Corylus avellana HOM05D003741 ORTHO05D004247 4.7e-36 154.8 98 70.4
CSS0030537 Camellia sinensis var. sinensis HOM05D003741 ORTHO05D004247 6.1e-36 154.5 117 64.1
CiPaw.07G128200 Carya illinoinensis HOM05D003741 ORTHO05D004247 6.1e-36 154.5 114 62.3
Manes.01G236900 Manihot esculenta HOM05D003741 ORTHO05D004247 6.1e-36 154.5 112 67.9
QL01p026787 Quercus lobata HOM05D003741 ORTHO05D004247 6.1e-36 154.5 114 64.9
THA.LOC104815908 Tarenaya hassleriana HOM05D003741 ORTHO05D004247 8.0e-36 154.1 125 63.2
C09p01250 Brassica napus HOM05D003741 ORTHO05D004247 1.4e-35 153.3 115 66.1
CANSAT11G2508 Cannabis sativa HOM05D003741 ORTHO05D004247 1.4e-35 153.3 124 60.5
Eucgr.A00982 Eucalyptus grandis HOM05D003741 ORTHO05D004247 1.4e-35 153.3 113 68.1
PGR042G0131 Punica granatum HOM05D003741 ORTHO05D004247 1.8e-35 152.9 126 59.5
BraA09t35787Z Brassica rapa HOM05D003741 ORTHO05D004247 3.0e-35 152.1 119 63.0
Lj1g0024084 Lotus japonicus HOM05D003741 ORTHO05D004247 3.0e-35 152.1 123 65.0
BcaC04g24082 Brassica carinata HOM05D003741 ORTHO05D004247 4.0e-35 151.8 115 65.2
FAN19G1627 Fragaria x ananassa HOM05D003741 ORTHO05D004247 6.8e-35 151.0 115 62.6
Medtr7g111060 Medicago truncatula HOM05D003741 ORTHO05D004247 6.8e-35 151.0 122 62.3
Sp1g01380 Schrenkiella parvula HOM05D003741 ORTHO05D004247 8.8e-35 150.6 119 64.7
A09p01170 Brassica napus HOM05D003741 ORTHO05D004247 1.2e-34 150.2 115 64.3
Glyma.03G226300 Glycine max HOM05D003741 ORTHO05D004247 1.2e-34 150.2 123 63.4
CARHR250060 Cardamine hirsuta HOM05D003741 ORTHO05D004247 1.5e-34 149.8 118 65.3
AL6G51730 Arabidopsis lyrata HOM05D003741 ORTHO05D004247 2.6e-34 149.1 118 63.6
Dinv03516 Davidia involucrata HOM05D003741 ORTHO05D004247 2.6e-34 149.1 119 60.5
Glyma.19G223300 Glycine max HOM05D003741 ORTHO05D004247 2.6e-34 149.1 117 65.0
C07p13080 Brassica napus HOM05D003741 ORTHO05D004247 4.4e-34 148.3 115 67.0
A08p37710 Brassica napus HOM05D003741 ORTHO05D004247 7.5e-34 147.5 116 66.4
BraA08t35667Z Brassica rapa HOM05D003741 ORTHO05D004247 7.5e-34 147.5 116 66.4
Thhalv10028753m.g Eutrema salsugineum HOM05D003741 ORTHO05D004247 7.5e-34 147.5 119 61.3
AT4G01610 Arabidopsis thaliana HOM05D003741 ORTHO05D004247 1.3e-33 146.7 118 62.7
BcaB01g02127 Brassica carinata HOM05D003741 ORTHO05D004247 1.7e-33 146.4 118 63.6
Aa31LG5G1330 Aethionema arabicum HOM05D003741 ORTHO05D004247 2.2e-33 146.0 118 63.6
BcaC06g35601 Brassica carinata HOM05D003741 ORTHO05D004247 2.2e-33 146.0 113 67.3
CARHR001840 Cardamine hirsuta HOM05D003741 ORTHO05D004247 2.2e-33 146.0 131 59.5
Medtr7g111050 Medicago truncatula HOM05D003741 ORTHO05D004247 2.2e-33 146.0 121 62.8
Carub.0006s3558 Capsella rubella HOM05D003741 ORTHO05D004247 2.8e-33 145.6 118 61.9
Nn4g25264 Nelumbo nucifera HOM05D003741 ORTHO05D004247 2.8e-33 145.6 113 58.4
Thhalv10008009m.g Eutrema salsugineum HOM05D003741 ORTHO05D004247 3.7e-33 145.2 119 62.2
Lju2566A1T38 Lonicera japonica HOM05D003741 ORTHO05D004247 4.9e-33 144.8 127 58.3
CARHR001600 Cardamine hirsuta HOM05D003741 ORTHO05D004247 6.3e-33 144.4 118 62.7
TAR636G2991 Trochodendron aralioides HOM05D003741 ORTHO05D004247 6.3e-33 144.4 123 56.1
BcaB03g13517 Brassica carinata HOM05D003741 ORTHO05D004247 8.3e-33 144.1 98 71.4
Rhsim01G0001600 Rhododendron simsii HOM05D003741 ORTHO05D004247 8.3e-33 144.1 103 63.1
Solyc02g069090.3 Solanum lycopersicum HOM05D003741 ORTHO05D004247 1.1e-32 143.7 121 57.9
Hma1.2p1_0098F.1_g048300 Hydrangea macrophylla HOM05D003741 ORTHO05D004247 1.8e-32 142.9 119 57.1
AT1G02305 Arabidopsis thaliana HOM05D003741 ORTHO05D004247 2.4e-32 142.5 115 61.7
ClCG10G013270 Citrullus lanatus HOM05D003741 ORTHO05D004247 4.1e-32 141.7 129 58.1
CsaV3_3G043370 Cucumis sativus L. HOM05D003741 ORTHO05D004247 4.1e-32 141.7 125 59.2
TPR.G8367 Trifolium pratense HOM05D003741 ORTHO05D004247 4.1e-32 141.7 121 62.8
Lalb_Chr18g0046281 Lupinus albus HOM05D003741 ORTHO05D004247 5.4e-32 141.4 122 60.7
Aqoxy2G02613 Aquilegia oxysepala HOM05D003741 ORTHO05D004247 7.0e-32 141.0 86 73.3
Peaxi162Scf00149g00919 Petunia axillaris HOM05D003741 ORTHO05D004247 7.0e-32 141.0 111 59.5
AL1G11640 Arabidopsis lyrata HOM05D003741 ORTHO05D004247 9.1e-32 140.6 115 62.6
BcaB01g06137 Brassica carinata HOM05D003741 ORTHO05D004247 9.1e-32 140.6 113 65.5
Psat3g015680 Pisum sativum HOM05D003741 ORTHO05D004247 1.2e-31 140.2 122 62.3
Nitab4.5_0003773g0090 Nicotiana tabacum HOM05D001270 ORTHO05D001099 1.6e-31 139.8 122 56.6
Sp6g01520 Schrenkiella parvula HOM05D003741 ORTHO05D004247 1.6e-31 139.8 122 58.2
Sopen02g018230 Solanum pennellii HOM05D003741 ORTHO05D004247 1.6e-31 139.8 120 59.2
vmacro02353 Vaccinium macrocarpon HOM05D003741 ORTHO05D004247 1.6e-31 139.8 100 63.0
Actinidia06418 Actinidia chinensis HOM05D003741 ORTHO05D004247 2.0e-31 139.4 109 60.6
ATR0796G236 Amborella trichopoda HOM05D003741 ORTHO05D004247 2.0e-31 139.4 112 58.0
Carub.0001s0134 Capsella rubella HOM05D003741 ORTHO05D004247 2.7e-31 139.0 131 57.3
Nitab4.5_0002463g0040 Nicotiana tabacum HOM05D003741 ORTHO05D004247 3.5e-31 138.7 113 61.1
Oeu060889.1 Olea europaea HOM05D003741 ORTHO05D004247 3.5e-31 138.7 112 60.7
MSTRG.21732 Avicennia marina HOM05D003741 ORTHO05D004247 4.5e-31 138.3 124 56.5
Migut.D00004 Erythranthe guttata HOM05D003741 ORTHO05D004247 4.5e-31 138.3 123 56.1
Solyc02g069100.4 Solanum lycopersicum HOM05D003741 ORTHO05D004247 4.5e-31 138.3 116 59.5
BolC3t12578H Brassica oleracea HOM05D003741 ORTHO05D004247 5.9e-31 137.9 120 61.7
Oeu060888.1 Olea europaea HOM05D003741 ORTHO05D004247 5.9e-31 137.9 103 63.1
Cc02_g27660 Coffea canephora HOM05D003741 ORTHO05D004247 1.0e-30 137.1 117 59.8
Nitab4.5_0002056g0060 Nicotiana tabacum HOM05D003741 ORTHO05D004247 1.3e-30 136.7 124 56.5
C04p03330 Brassica napus HOM05D003741 ORTHO05D004247 1.7e-30 136.3 134 57.5
Solyc02g069110.4 Solanum lycopersicum HOM05D003741 ORTHO05D004247 1.7e-30 136.3 122 56.6
Psat3g015720 Pisum sativum HOM05D003741 ORTHO05D004247 2.3e-30 136.0 122 57.4
AL1G11630 Arabidopsis lyrata HOM05D003741 ORTHO05D004247 3.8e-30 135.2 117 60.7
Phvul.001G220100 Phaseolus vulgaris HOM05D003741 ORTHO05D004247 3.8e-30 135.2 117 60.7
Sed0014336 Sechium edule HOM05D003741 ORTHO05D004247 3.8e-30 135.2 124 56.5
CAN.G1222.9 Capsicum annuum HOM05D003741 ORTHO05D004247 6.6e-30 134.4 122 56.6
Sed0003001 Sechium edule HOM05D003741 ORTHO05D004247 6.6e-30 134.4 111 58.6
CAN.G1222.10 Capsicum annuum HOM05D003741 ORTHO05D004247 1.5e-29 133.3 126 54.0
VMungo1383G0455 Vigna mungo HOM05D003741 ORTHO05D004247 1.9e-29 132.9 117 61.5
Ah.15g095460 Amaranthus hybridus HOM05D003741 ORTHO05D004247 2.5e-29 132.5 96 63.5
AT1G02300 Arabidopsis thaliana HOM05D003741 ORTHO05D004247 2.5e-29 132.5 115 60.9
AUR62001249 Chenopodium quinoa HOM05D003741 ORTHO05D004247 4.2e-29 131.7 115 55.7
Lalb_Chr04g0260241 Lupinus albus HOM05D003741 ORTHO05D004247 4.2e-29 131.7 116 59.5
AUR62022081 Chenopodium quinoa HOM05D003741 ORTHO05D004247 5.5e-29 131.3 113 55.8
BcaC02g12465 Brassica carinata HOM05D003741 ORTHO05D004247 3.6e-28 128.6 109 64.2
SGA_v2.0_scaffold80G25671 Striga asiatica HOM05D003741 ORTHO05D004247 1.0e-27 127.1 125 51.2
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.4e-27 126.7 87 66.7
Hund05614 Selenicereus undatus HOM05D003741 ORTHO05D004247 1.4e-27 126.7 108 54.6
BraA07t28072Z Brassica rapa HOM05D003741 ORTHO05D004247 1.8e-27 126.3 96 67.7
Hund18513 Selenicereus undatus HOM05D003741 ORTHO05D004247 1.8e-27 126.3 117 54.7
HPP92_017316 Vanilla planifolia HOM05D003741 ORTHO05D004247 1.8e-27 126.3 114 53.5
DCAR_030726 Daucus carota HOM05D003741 ORTHO05D004247 4.0e-27 125.2 100 59.0
Ah.08g218400 Amaranthus hybridus HOM05D003741 ORTHO05D004247 8.9e-27 124.0 118 53.4
A07p02730 Brassica napus HOM05D003741 ORTHO05D004247 1.5e-26 123.2 90 68.9
PSO210G0649 Papaver somniferum HOM05D003741 ORTHO05D004247 2.2e-25 119.4 96 57.3
PSO210G2167 Papaver somniferum HOM05D003741 ORTHO05D004247 2.2e-25 119.4 112 50.9
PSO761G0307 Papaver somniferum HOM05D003741 ORTHO05D004247 3.7e-25 118.6 119 52.9
CDE05G0438 Ceratophyllum demersum HOM05D003741 ORTHO05D004247 1.1e-24 117.1 119 49.6
Zm00001eb322580 Zea mays HOM05D003741 ORTHO05D004247 7.0e-24 114.4 109 50.5
BolC8t46806H Brassica oleracea HOM05D003741 ORTHO05D004247 1.6e-23 113.2 107 57.9
DCAR_002344 Daucus carota HOM05D003741 ORTHO05D004247 5.9e-23 111.3 91 57.1
Peaxi162Scf00149g01016 Petunia axillaris HOM05D003741 ORTHO05D004247 5.9e-23 111.3 129 51.9
CAN.G1153.3 Capsicum annuum HOM05D003741 ORTHO05D004247 3.3e-21 105.5 87 60.9
Os05g0310500 Oryza sativa ssp. japonica HOM05D003741 ORTHO05D004247 3.3e-21 105.5 163 38.0
CAN.G1222.12 Capsicum annuum HOM05D003741 ORTHO05D004247 4.3e-21 105.1 113 48.7
Cfa004932 Carpinus fangiana HOM05D003741 ORTHO05D004247 2.1e-20 102.8 62 71.0
C08p00070 Brassica napus HOM05D003741 ORTHO05D004247 2.8e-20 102.4 96 57.3
FAN26G2502 Fragaria x ananassa HOM05D002459 ORTHO05D003006 8.0e-20 100.9 67 67.2
BolC7t41802H Brassica oleracea HOM05D003741 ORTHO05D004247 2.2e-17 92.8 82 61.0
Ca_09258_v3 Cicer arietinum L. HOM05D003741 ORTHO05D004247 4.9e-17 91.7 90 54.4
arahy.Tifrunner.gnm1.ann1.7SL7L9 Arachis hypogaea HOM05D001812 ORTHO05D004247 1.1e-16 90.5 91 51.6
Aa31LG1G10210 Aethionema arabicum HOM05D003741 ORTHO05D004247 1.4e-16 90.1 89 57.3
arahy.Tifrunner.gnm1.ann1.07ATAK Arachis hypogaea HOM05D003741 ORTHO05D004247 1.4e-16 90.1 68 67.6
SMO351G0395 Selaginella moellendorffii HOM05D003741 ORTHO05D004247 2.4e-16 89.4 112 45.5
Cc02_g27680 Coffea canephora HOM05D003741 ORTHO05D004247 3.2e-16 89.0 78 59.0
CAN.G1222.7 Capsicum annuum HOM05D003741 ORTHO05D004247 4.6e-15 85.1 83 55.4
EL10Ac7g18033 Beta vulgaris HOM05D003741 ORTHO05D004247 7.8e-15 84.3 91 47.3
Sc05g0003530 Simmondsia chinensis HOM05D003741 ORTHO05D004247 1.0e-14 84.0 62 62.9
CAN.G758.10 Capsicum annuum HOM05D003741 ORTHO05D004247 5.0e-14 81.6 105 44.8
arahy.Tifrunner.gnm1.ann1.476X2T Arachis hypogaea HOM05D001812 ORTHO05D004247 8.6e-14 80.9 52 71.2
TAR636G3591 Trochodendron aralioides HOM05D003741 ORTHO05D004247 2.5e-13 79.3 53 62.3
Ca_09259_v3 Cicer arietinum L. HOM05D003741 ORTHO05D004247 7.3e-13 77.8 86 51.2
Pp3c10_7510 Physcomitrium patens HOM05D003741 ORTHO05D004247 1.6e-12 76.6 124 38.7
BraSC37t46143Z Brassica rapa HOM05D000996 ORTHO05D017521 2.3e-11 72.8 54 59.3
BolC7t43486H Brassica oleracea HOM05D000996 ORTHO05D017521 8.9e-11 70.9 59 54.2
C04p28420 Brassica napus HOM05D000996 ORTHO05D017521 1.2e-10 70.5 53 58.5
BolC4t24388H Brassica oleracea HOM05D000996 ORTHO05D017521 1.2e-10 70.5 53 58.5
Pp3c2_6240 Physcomitrium patens HOM05D003741 ORTHO05D004247 9.8e-10 67.4 89 40.4
AagrBONN_evm.TU.Sc2ySwM_117.76 Anthoceros agrestis HOM05D003741 ORTHO05D004247 1.3e-09 67.0 97 39.2
Mapoly0032s0066 Marchantia polymorpha HOM05D003741 ORTHO05D004247 4.9e-09 65.1 111 34.2
A06p20790 Brassica napus HOM05D000222 ORTHO05D017521 8.3e-09 64.3 54 55.6
CAN.G1222.15 Capsicum annuum HOM05D003741 ORTHO05D004247 1.1e-08 63.9 92 40.2
QL01p026795 Quercus lobata HOM05D003741 ORTHO05D004247 7.1e-08 61.2 39 61.5


User provided reference genes

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