Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 3.0e-154 548.5 282 100.0
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 3.4e-110 402.1 286 72.7
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 1.6e-107 393.3 281 72.6
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 2.1e-107 392.9 284 72.9
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 2.7e-107 392.5 285 71.2
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 6.1e-107 391.3 286 70.6
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 6.1e-107 391.3 284 73.6
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 1.0e-106 390.6 289 72.7
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 2.0e-105 386.3 279 72.0
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 3.3e-105 385.6 283 73.1
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 2.2e-104 382.9 286 71.7
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 2.8e-104 382.5 268 70.9
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 1.4e-103 380.2 268 71.3
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 1.4e-103 380.2 268 70.5
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 9.1e-103 377.5 279 69.9
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 1.2e-102 377.1 283 67.1
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 4.5e-102 375.2 274 69.3
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 1.0e-101 374.0 265 69.1
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.7e-101 373.2 252 73.8
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 1.1e-100 370.5 284 66.2
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 1.9e-100 369.8 281 69.0
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 1.9e-100 369.8 283 68.6
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 1.9e-100 369.8 281 68.3
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 2.5e-100 369.4 280 67.9
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 5.5e-100 368.2 266 68.8
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 2.3e-98 362.8 282 67.4
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 3.0e-98 362.5 285 66.7
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.0e-98 362.5 280 66.8
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 8.8e-98 360.9 279 67.4
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 8.8e-98 360.9 280 66.4
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 2.6e-97 359.4 280 66.4
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 2.6e-97 359.4 249 73.5
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 9.7e-97 357.5 281 68.3
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 9.7e-97 357.5 281 68.7
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 1.7e-96 356.7 279 66.3
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 3.7e-96 355.5 258 70.2
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 1.8e-95 353.2 268 69.8
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 1.8e-95 353.2 225 77.3
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 3.1e-95 352.4 253 71.1
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 5.3e-95 351.7 249 71.1
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 7.0e-95 351.3 375 54.7
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 1.2e-94 350.5 239 72.8
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 2.6e-94 349.4 278 66.9
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 3.5e-94 349.0 239 72.4
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 5.9e-94 348.2 226 77.0
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 1.0e-93 347.4 239 72.0
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 1.3e-93 347.1 227 74.4
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 3.8e-93 345.5 232 74.6
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 6.5e-93 344.7 281 61.6
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 5.5e-92 341.7 251 68.5
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 7.2e-92 341.3 261 66.3
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 7.2e-92 341.3 261 67.0
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.2e-91 340.5 226 77.9
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 2.1e-91 339.7 245 69.8
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 2.7e-91 339.3 239 71.5
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 3.6e-91 339.0 256 68.8
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 1.8e-90 336.7 286 64.7
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 5.2e-90 335.1 231 72.3
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 2.6e-89 332.8 224 75.4
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 4.4e-89 332.0 271 63.5
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 5.7e-89 331.6 224 74.1
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 1.3e-88 330.5 255 67.8
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 1.3e-88 330.5 247 67.2
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 5.4e-87 325.1 224 72.3
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 3.5e-86 322.4 274 62.0
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 1.0e-85 320.9 251 68.9
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.3e-85 320.5 221 73.8
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 2.5e-84 316.2 280 60.7
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 1.2e-83 313.9 224 69.6
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 5.2e-82 308.5 237 65.8
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 6.8e-82 308.1 246 63.8
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 1.3e-80 303.9 300 57.7
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 4.9e-80 302.0 231 71.0
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 6.3e-80 301.6 185 82.2
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 8.3e-80 301.2 253 61.7
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 1.4e-79 300.4 226 67.7
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 1.0e-77 294.3 191 75.4
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 1.3e-77 293.9 184 78.8
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 7.2e-76 288.1 253 60.5
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 1.8e-74 283.5 279 57.3
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.2e-73 280.8 213 69.0
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 1.7e-69 266.9 204 64.7
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 2.3e-66 256.5 262 54.2
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 6.8e-66 255.0 170 73.5
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 1.7e-64 250.4 276 51.8
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 2.2e-64 250.0 241 58.1
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 1.9e-63 246.9 241 53.5
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 1.6e-62 243.8 236 56.4
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 2.7e-62 243.0 259 55.6
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 1.2e-57 227.6 152 75.7
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 1.5e-57 227.3 150 75.3
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 2.6e-57 226.5 419 39.4
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 3.7e-56 222.6 191 62.3
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.7e-56 222.6 199 59.8
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.1e-55 221.1 202 51.5
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 4.6e-54 215.7 195 56.9
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 2.5e-52 209.9 153 69.9
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 2.1e-43 180.3 149 62.4
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 1.5e-33 147.5 179 49.2
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 2.1e-30 137.1 94 71.3
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 2.5e-28 130.2 163 41.7
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 1.6e-27 127.5 284 32.7
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 4.8e-27 125.9 89 70.8
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 5.6e-20 102.4 62 79.0
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 1.1e-18 98.2 197 35.5
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.3e-12 76.6 38 92.1
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.3e-12 76.6 38 92.1
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 1.6e-11 74.3 38 89.5
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 4.1e-10 69.7 116 37.9
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 1.3e-08 64.7 225 32.0
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 6.5e-08 62.4 232 25.9
TAR119G0001 Trochodendron aralioides HOM05D002234 ORTHO05D002254 6.5e-08 62.4 225 28.0
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 1.1e-07 61.6 229 28.4
Cre03.g189300 Chlamydomonas reinhardtii HOM05D002234 ORTHO05D002254 5.5e-07 59.3 241 24.5
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 7.2e-07 58.9 121 29.8
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 9.3e-07 58.5 254 27.6
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 9.3e-07 58.5 229 26.6
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 1.2e-06 58.2 220 29.5
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 1.2e-06 58.2 254 27.6
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 1.6e-06 57.8 254 27.6
Lsat_1_v5_gn_8_74601 Lactuca sativa HOM05D050850 ORTHO05D008918 2.1e-06 57.4 34 76.5
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 2.7e-06 57.0 171 31.0
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 2.7e-06 57.0 99 34.3
Lj6g0013923 Lotus japonicus HOM05D002234 ORTHO05D002254 2.7e-06 57.0 250 25.6
PSO210G7268 Papaver somniferum HOM05D002234 ORTHO05D002254 2.7e-06 57.0 231 26.4
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 3.5e-06 56.6 220 29.1
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 3.5e-06 56.6 248 24.6
ClCG05G004210 Citrullus lanatus HOM05D006432 ORTHO05D008257 3.5e-06 56.6 182 27.5
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 3.5e-06 56.6 222 27.0
TPR.G8085 Trifolium pratense HOM05D002234 ORTHO05D002254 3.5e-06 56.6 233 24.9
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 7.9e-06 55.5 221 28.1
C04p72510 Brassica napus HOM05D000051 ORTHO05D000015 7.9e-06 55.5 95 38.9
BolC4t28739H Brassica oleracea HOM05D000051 ORTHO05D000015 7.9e-06 55.5 95 38.9
Lalb_Chr06g0169201 Lupinus albus HOM05D006432 ORTHO05D008257 7.9e-06 55.5 162 29.0
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 7.9e-06 55.5 162 28.4


User provided reference genes

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