Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 8.0e-177 623.6 311 100.0
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 6.7e-131 471.1 298 77.5
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 1.8e-123 446.4 312 69.6
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 3.0e-123 445.7 312 69.6
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 1.5e-122 443.4 305 70.5
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 5.6e-122 441.4 307 69.1
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 2.8e-121 439.1 307 70.7
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 4.0e-120 435.3 305 70.2
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 9.0e-120 434.1 315 67.3
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 1.3e-118 430.3 311 68.5
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 4.9e-118 428.3 306 67.0
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 5.5e-117 424.9 310 65.8
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 2.5e-114 416.0 309 65.0
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 2.4e-112 409.5 310 65.5
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 2.0e-111 406.4 298 63.8
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 3.8e-110 402.1 313 63.9
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 2.5e-109 399.4 305 64.9
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 3.2e-109 399.1 312 63.5
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 2.1e-108 396.4 310 62.9
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 3.6e-108 395.6 313 62.6
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 5.1e-107 391.7 312 60.3
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 8.8e-107 391.0 302 63.2
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 1.1e-106 390.6 311 60.5
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 3.3e-106 389.0 304 63.5
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.2e-103 380.6 309 60.2
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.9e-103 378.3 308 60.1
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 1.7e-102 376.7 319 60.2
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.9e-102 375.9 309 59.5
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.9e-102 375.9 309 59.5
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 2.9e-102 375.9 313 58.8
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 3.8e-102 375.6 307 61.2
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 1.9e-101 373.2 294 61.6
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.2e-97 359.8 293 61.1
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.2e-97 359.8 286 61.5
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 3.8e-94 349.0 302 56.3
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 8.5e-94 347.8 287 57.8
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 3.6e-92 342.4 297 56.2
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 8.8e-91 337.8 308 55.5
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 1.5e-90 337.0 303 55.1
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 5.7e-90 335.1 302 54.3
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 5.7e-90 335.1 279 58.1
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 1.7e-89 333.6 294 54.8
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 1.7e-89 333.6 302 54.3
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 6.3e-89 331.6 302 56.6
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 1.4e-88 330.5 303 54.1
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.5e-87 325.5 252 63.1
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.9e-86 322.8 269 58.7
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 5.0e-86 322.0 307 53.4
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 6.5e-86 321.6 306 53.3
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.1e-85 320.9 295 53.2
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.5e-85 318.5 250 62.4
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 2.1e-84 316.6 302 52.6
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 3.6e-84 315.8 280 57.1
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 4.7e-84 315.5 307 52.4
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 8.0e-84 314.7 289 56.4
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 1.4e-83 313.9 301 52.5
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 8.3e-81 304.7 278 54.0
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 1.1e-80 304.3 295 51.2
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 1.8e-80 303.5 238 63.4
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 2.4e-80 303.1 223 69.5
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 1.6e-79 300.4 298 49.7
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 1.6e-76 290.4 311 50.2
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 4.7e-76 288.9 340 48.5
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 8.0e-76 288.1 302 50.0
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 2.3e-75 286.6 305 49.2
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 3.0e-75 286.2 287 52.6
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 1.4e-72 277.3 327 48.3
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 1.8e-72 276.9 215 62.8
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 2.9e-70 269.6 189 68.8
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 5.0e-70 268.9 192 67.7
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 5.0e-70 268.9 189 68.8
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 4.2e-69 265.8 282 47.9
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 3.6e-68 262.7 218 59.2
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 9.8e-66 254.6 284 47.5
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 7.0e-64 248.4 279 46.6
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 1.6e-63 247.3 276 47.1
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 2.3e-62 243.4 246 50.0
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 6.6e-62 241.9 231 57.1
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 2.8e-60 236.5 193 63.7
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.2e-52 211.1 157 66.9
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 2.5e-45 186.8 146 64.4
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 5.3e-27 125.9 194 38.7
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 7.9e-15 85.5 145 39.3


User provided reference genes

Program Settings