Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 2.0e-124 449.1 228 100.0
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 6.7e-88 327.8 221 74.2
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 9.3e-82 307.4 222 67.1
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 2.7e-81 305.8 222 67.1
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 1.0e-80 303.9 222 67.6
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 1.1e-79 300.4 219 66.7
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 3.3e-79 298.9 218 67.4
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 1.6e-78 296.6 222 65.3
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 1.8e-77 293.1 219 68.0
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 5.9e-76 288.1 219 64.8
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 2.2e-75 286.2 223 64.6
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 1.4e-74 283.5 222 64.0
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 1.9e-74 283.1 222 64.0
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 2.1e-73 279.6 219 63.9
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 1.8e-72 276.6 222 64.9
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 1.8e-72 276.6 222 61.7
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 3.0e-72 275.8 224 62.9
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 8.8e-72 274.2 222 63.5
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 3.3e-71 272.3 222 63.5
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 4.3e-71 271.9 220 62.3
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 7.4e-71 271.2 231 60.2
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 1.3e-70 270.4 220 61.8
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 4.8e-70 268.5 222 62.2
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 4.8e-70 268.5 222 59.5
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 4.8e-70 268.5 222 62.2
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 2.4e-69 266.2 221 59.3
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 2.4e-69 266.2 222 61.7
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 9.1e-69 264.2 221 59.7
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 1.2e-68 263.8 222 59.0
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 1.5e-68 263.5 223 57.4
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 1.5e-68 263.5 223 57.8
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.0e-68 263.1 228 60.5
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 6.5e-67 258.1 219 58.9
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 1.4e-66 256.9 222 56.8
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 1.9e-66 256.5 225 60.4
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 4.2e-66 255.4 232 59.1
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 7.2e-66 254.6 222 56.8
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 1.0e-64 250.8 222 55.9
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 1.4e-64 250.4 222 57.7
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 1.4e-64 250.4 222 55.0
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 1.4e-64 250.4 215 59.1
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 2.3e-64 249.6 222 57.7
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 3.0e-64 249.2 219 58.4
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 8.8e-64 247.7 197 61.9
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 2.0e-63 246.5 222 54.1
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 2.0e-63 246.5 222 54.5
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 2.0e-63 246.5 222 54.5
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 2.6e-63 246.1 222 57.2
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 3.3e-63 245.7 210 60.5
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 2.8e-62 242.7 220 55.9
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 3.7e-62 242.3 220 55.5
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 6.3e-62 241.5 218 58.3
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 1.4e-61 240.4 220 56.4
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 1.8e-61 240.0 224 57.6
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 2.4e-61 239.6 220 57.3
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 3.1e-61 239.2 218 57.3
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 4.1e-61 238.8 226 57.1
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 1.5e-60 236.9 221 55.7
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 2.0e-60 236.5 172 68.6
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 3.5e-60 235.7 219 56.2
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 3.5e-60 235.7 220 56.8
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 1.7e-59 233.4 217 55.8
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 2.2e-59 233.0 231 54.1
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 5.0e-59 231.9 218 54.6
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 5.0e-59 231.9 219 53.9
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 6.5e-59 231.5 218 55.0
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 8.5e-59 231.1 219 53.0
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 1.1e-58 230.7 219 54.3
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 1.5e-58 230.3 219 53.9
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 1.5e-58 230.3 224 54.9
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 4.2e-58 228.8 217 54.8
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 7.2e-58 228.0 216 55.1
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 9.4e-58 227.6 235 54.0
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 1.2e-57 227.3 216 55.1
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 1.6e-57 226.9 222 52.7
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 1.4e-56 223.8 231 51.9
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 5.7e-55 218.4 221 50.2
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 2.2e-54 216.5 221 51.6
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 1.4e-53 213.8 245 48.6
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 1.8e-53 213.4 223 48.0
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 1.8e-53 213.4 244 48.8
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 1.8e-53 213.4 210 55.7
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 1.7e-51 206.8 219 47.0
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 6.5e-51 204.9 193 54.4
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 6.5e-51 204.9 142 66.2
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 1.1e-50 204.1 178 60.7
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.8e-48 196.8 220 52.3
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 4.0e-48 195.7 218 50.0
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 4.0e-48 195.7 228 47.4
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 6.8e-48 194.9 199 49.7
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 3.7e-46 189.1 216 48.1
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 1.4e-45 187.2 198 50.0
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 4.1e-45 185.7 306 40.5
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 1.8e-40 170.2 195 48.7
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 1.8e-40 170.2 222 43.7
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 1.5e-39 167.2 201 45.8
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 2.0e-39 166.8 254 40.2
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 5.7e-39 165.2 304 35.5
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 7.5e-39 164.9 177 52.0
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 3.7e-38 162.5 298 35.9
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 1.1e-37 161.0 195 43.1
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 1.0e-35 154.5 166 48.8
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 1.9e-34 150.2 88 73.9
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 1.9e-34 150.2 218 41.7
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.8e-33 146.4 131 59.5
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 3.6e-33 146.0 278 35.6
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 5.7e-31 138.7 144 45.8
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 3.7e-30 136.0 216 37.5
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 1.4e-29 134.0 75 78.7
MD07G1162500 Malus domestica HOM05D006082 ORTHO05D007616 2.4e-29 133.3 138 50.7
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 3.2e-29 132.9 211 37.4
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 2.7e-28 129.8 227 35.2
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 5.9e-28 128.6 73 76.7
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 5.9e-28 128.6 128 55.5
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 7.8e-28 128.3 242 36.0
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 2.9e-27 126.3 202 37.1
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 8.6e-27 124.8 205 38.5
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 1.1e-26 124.4 129 54.3
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 2.9e-22 109.8 196 35.7
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 2.9e-22 109.8 203 36.5
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 9.5e-18 94.7 73 67.1
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 1.5e-15 87.4 104 49.0
BcaC05g24595 Brassica carinata HOM05D006082 ORTHO05D007616 5.6e-10 68.9 81 51.9
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 2.1e-09 67.0 167 30.5
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 6.8e-08 62.0 57 57.9
CAN.G34.12 Capsicum annuum HOM05D006082 ORTHO05D007616 6.4e-06 55.5 46 56.5


User provided reference genes

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