Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 1.5e-137 493.0 290 100.0
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 1.1e-74 284.3 296 67.6
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 1.8e-74 283.5 292 60.3
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 1.0e-72 277.7 304 64.8
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 1.9e-63 246.9 322 55.3
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.2e-62 244.2 298 58.1
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.1e-62 243.4 298 58.4
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 8.8e-61 238.0 298 57.7
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 8.3e-59 231.5 292 52.1
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 3.5e-57 226.1 296 55.7
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 2.3e-53 213.4 300 48.3
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 5.2e-53 212.2 298 43.3
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 1.5e-52 210.7 304 54.6
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 4.4e-52 209.1 293 52.2
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 3.2e-50 203.0 307 50.2
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 4.6e-49 199.1 307 55.4
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 5.9e-49 198.7 301 51.5
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 7.8e-49 198.4 293 43.3
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 3.0e-48 196.4 266 42.1
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 3.0e-48 196.4 266 42.1
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 5.0e-48 195.7 290 41.0
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 4.3e-47 192.6 287 41.1
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.2e-46 191.0 260 54.2
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 1.6e-46 190.7 256 59.0
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 2.1e-46 190.3 309 45.0
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 3.6e-46 189.5 260 53.5
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 3.6e-46 189.5 260 53.1
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 8.0e-46 188.3 300 47.7
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 8.0e-46 188.3 295 46.1
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 1.0e-45 188.0 309 42.4
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 2.3e-45 186.8 290 46.6
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 1.2e-44 184.5 270 40.7
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.5e-44 184.1 305 40.7
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.5e-44 184.1 305 40.7
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 1.5e-44 184.1 301 42.5
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 4.4e-44 182.6 270 40.0
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.7e-43 180.6 307 41.4
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.7e-43 179.5 305 40.0
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 2.4e-42 176.8 269 41.3
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 7.0e-42 175.3 286 38.5
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 9.2e-42 174.9 289 47.4
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 1.2e-41 174.5 299 40.8
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 2.0e-41 173.7 269 39.4
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.5e-41 172.9 299 40.5
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 7.8e-41 171.8 271 40.6
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.7e-40 170.6 306 43.1
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 1.7e-40 170.6 304 43.8
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 8.6e-40 168.3 267 42.7
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 2.8e-38 163.3 300 41.0
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 4.7e-38 162.5 290 46.6
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 3.1e-37 159.8 289 43.6
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 5.2e-37 159.1 292 41.8
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 3.4e-36 156.4 284 39.4
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 2.2e-35 153.7 306 46.7
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 1.0e-32 144.8 268 36.9
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 4.3e-31 139.4 275 39.6
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 4.3e-31 139.4 298 38.6
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 1.2e-30 137.9 288 47.9
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 6.2e-30 135.6 298 37.9
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 1.8e-29 134.0 148 59.5
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 3.1e-29 133.3 268 45.5
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 3.1e-29 133.3 274 43.1
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 5.2e-29 132.5 304 36.2
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 1.5e-28 131.0 253 47.0
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 5.8e-28 129.0 300 35.0
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 2.9e-27 126.7 284 38.4
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 2.9e-27 126.7 289 37.0
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 1.4e-26 124.4 307 35.8
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 5.4e-26 122.5 297 35.7
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 9.2e-26 121.7 257 37.7
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 1.6e-25 120.9 304 34.9
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 2.7e-25 120.2 292 37.3
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 3.5e-25 119.8 300 31.7
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 4.6e-25 119.4 308 33.1
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 7.8e-25 118.6 281 35.6
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 1.3e-24 117.9 288 30.9
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 1.7e-24 117.5 288 35.1
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 2.3e-24 117.1 262 40.8
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 6.6e-24 115.5 304 34.5
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 6.6e-24 115.5 295 34.2
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 4.3e-23 112.8 302 32.1
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 7.3e-23 112.1 314 32.8
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 9.6e-23 111.7 312 31.7
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 2.1e-22 110.5 312 31.1
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 1.1e-21 108.2 311 30.9
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.4e-21 107.8 298 32.9
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 1.8e-21 107.5 235 34.0
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 1.8e-21 107.5 314 31.5
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 2.4e-21 107.1 231 42.4
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 2.4e-21 107.1 298 33.9
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 3.1e-21 106.7 231 38.1
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 6.9e-21 105.5 289 40.1
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 3.4e-20 103.2 277 34.3
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 5.8e-20 102.4 233 38.2
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 1.9e-18 97.4 294 32.0
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 5.4e-18 95.9 264 37.9
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 7.1e-18 95.5 294 30.6
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 2.1e-17 94.0 288 31.9
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 3.5e-17 93.2 289 30.1
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 4.6e-17 92.8 258 35.7
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 6.0e-17 92.4 285 31.2
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 7.8e-17 92.0 286 31.5
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 8.7e-16 88.6 267 30.3
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 1.9e-15 87.4 258 31.0
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 5.6e-15 85.9 189 34.9
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 9.6e-15 85.1 284 27.8
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 9.6e-15 85.1 240 32.5
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 1.8e-13 80.9 170 40.6
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 3.1e-13 80.1 100 47.0
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 2.6e-12 77.0 292 27.7
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 2.9e-11 73.6 219 31.1
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.1e-10 71.6 115 43.5
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 7.1e-10 68.9 330 35.8
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 1.2e-09 68.2 234 33.3
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 1.6e-09 67.8 227 35.7
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 2.1e-09 67.4 359 33.4
Hund16734 Selenicereus undatus HOM05D007199 ORTHO05D007257 6.0e-09 65.9 226 27.9
EL10Ac1g00217 Beta vulgaris HOM05D021513 ORTHO05D007257 1.3e-08 64.7 292 30.8
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 1.8e-08 64.3 273 27.8
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 3.0e-08 63.5 267 26.2
Peaxi162Scf00767g00113 Petunia axillaris HOM05D007199 ORTHO05D007257 6.7e-08 62.4 226 28.8
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 1.1e-07 61.6 265 29.8
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 1.5e-07 61.2 166 30.7
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 1.9e-07 60.8 296 25.0
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 3.3e-07 60.1 252 36.9
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 5.6e-07 59.3 264 25.8
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 2.1e-06 57.4 82 43.9


User provided reference genes

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