Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.667 Acer truncatum HOM05D001390 ORTHO05D001522 3.6e-232 808.1 486 100.0
Ciclev10018452m.g Citrus clementina HOM05D001390 ORTHO05D001522 7.4e-145 518.1 506 60.5
Thecc.01G342900 Theobroma cacao HOM05D001390 ORTHO05D001522 1.5e-121 440.7 500 53.6
QL04p060935 Quercus lobata HOM05D001390 ORTHO05D001522 2.6e-121 439.9 500 51.8
CiPaw.01G076500 Carya illinoinensis HOM05D001390 ORTHO05D001522 1.7e-120 437.2 508 52.0
Haze_15657 Corylus avellana HOM05D001390 ORTHO05D001522 3.7e-120 436.0 500 51.4
COL.COLO4_06289 Corchorus olitorius HOM05D001390 ORTHO05D001522 2.0e-118 430.3 497 54.1
Cfa003801 Carpinus fangiana HOM05D001390 ORTHO05D001522 2.5e-116 423.3 496 50.8
Gorai.008G125200 Gossypium raimondii HOM05D001390 ORTHO05D001522 3.2e-116 422.9 502 51.6
Gohir.D12G115700 Gossypium hirsutum HOM05D001390 ORTHO05D001522 1.8e-114 417.2 501 51.1
Dinv35115 Davidia involucrata HOM05D001390 ORTHO05D001522 7.5e-113 411.8 509 49.7
Gohir.A12G112100 Gossypium hirsutum HOM05D001390 ORTHO05D001522 1.3e-112 411.0 502 50.8
Potri.002G170900 Populus trichocarpa HOM05D001390 ORTHO05D001522 3.1e-111 406.4 506 51.2
Sabra02G0141600 Salix brachista HOM05D001390 ORTHO05D001522 4.1e-111 406.0 499 49.7
Potri.014G098600 Populus trichocarpa HOM05D001390 ORTHO05D001522 2.0e-110 403.7 509 50.3
Duzib133G1296 Durio zibethinus HOM05D001390 ORTHO05D001522 3.5e-110 402.9 485 52.2
TAR636G3487 Trochodendron aralioides HOM05D001390 ORTHO05D001522 2.5e-108 396.7 502 48.0
Manes.05G023000 Manihot esculenta HOM05D001390 ORTHO05D001522 3.3e-108 396.4 500 48.2
Prupe.2G188000 Prunus persica HOM05D001390 ORTHO05D001522 7.3e-108 395.2 498 49.2
Gohir.A08G125300 Gossypium hirsutum HOM05D001390 ORTHO05D001522 3.6e-107 392.9 514 49.0
TWI59G0604 Tripterygium wilfordii HOM05D001390 ORTHO05D001522 4.4e-105 386.0 488 48.0
MD01G1080500 Malus domestica HOM05D001390 ORTHO05D001522 5.7e-105 385.6 508 47.2
Eucgr.D02374 Eucalyptus grandis HOM05D001390 ORTHO05D001522 1.3e-104 384.4 507 46.9
TWI14G0654 Tripterygium wilfordii HOM05D001390 ORTHO05D001522 6.4e-104 382.1 481 47.8
Gohir.D08G146300 Gossypium hirsutum HOM05D001390 ORTHO05D001522 8.3e-104 381.7 522 47.7
MD07G1149400 Malus domestica HOM05D001390 ORTHO05D001522 8.3e-104 381.7 505 47.5
RcHm_v2.0_Chr1g0359431 Rosa chinensis HOM05D001390 ORTHO05D001522 1.1e-103 381.3 504 49.8
Sabra14G0072200 Salix brachista HOM05D001390 ORTHO05D001522 7.0e-103 378.6 488 49.2
Gorai.004G151800 Gossypium raimondii HOM05D001390 ORTHO05D001522 3.5e-102 376.3 513 47.8
CANSAT56G0571 Cannabis sativa HOM05D001390 ORTHO05D001522 5.0e-101 372.5 497 50.7
FAN10G2771 Fragaria x ananassa HOM05D001390 ORTHO05D001522 1.1e-100 371.3 499 49.1
FAN03G3144 Fragaria x ananassa HOM05D001390 ORTHO05D001522 3.3e-100 369.8 499 48.9
FAN10G0149 Fragaria x ananassa HOM05D001390 ORTHO05D001522 4.3e-100 369.4 499 48.9
FAN06G3445 Fragaria x ananassa HOM05D001390 ORTHO05D001522 2.1e-99 367.1 499 48.7
FvH4_7g16420 Fragaria vesca HOM05D001390 ORTHO05D001522 8.0e-99 365.2 499 48.5
FAN06G3722 Fragaria x ananassa HOM05D001390 ORTHO05D001522 1.1e-98 364.8 499 48.3
FAN01G2109 Fragaria x ananassa HOM05D001390 ORTHO05D001522 1.6e-94 350.9 498 47.2
Glyma.07G055900 Glycine max HOM05D001390 ORTHO05D001522 4.6e-94 349.4 501 45.1
TAR629G3253 Trochodendron aralioides HOM05D001390 ORTHO05D001522 2.5e-92 343.6 504 45.8
ClCG06G001240 Citrullus lanatus HOM05D001390 ORTHO05D001522 6.2e-91 339.0 516 43.2
Phvul.010G114100 Phaseolus vulgaris HOM05D001390 ORTHO05D001522 1.8e-90 337.4 500 43.0
Lj3g0006224 Lotus japonicus HOM05D001390 ORTHO05D001522 1.2e-89 334.7 507 43.2
Actinidia20240 Actinidia chinensis HOM05D001390 ORTHO05D001522 5.8e-89 332.4 535 46.0
THA.LOC104801374 Tarenaya hassleriana HOM05D001390 ORTHO05D001522 9.9e-89 331.6 480 45.0
Nn1g00227 Nelumbo nucifera HOM05D001390 ORTHO05D001522 1.3e-88 331.3 509 43.0
arahy.Tifrunner.gnm1.ann1.CF5AFL Arachis hypogaea HOM05D001390 ORTHO05D001522 3.7e-88 329.7 504 43.5
Glyma.16G024600 Glycine max HOM05D001390 ORTHO05D001522 8.3e-88 328.6 499 44.1
Psat4g161040 Pisum sativum HOM05D001390 ORTHO05D001522 4.1e-87 326.2 489 44.2
arahy.Tifrunner.gnm1.ann1.369WQ5 Arachis hypogaea HOM05D001390 ORTHO05D001522 7.1e-87 325.5 504 43.5
VMungo0331G1667 Vigna mungo HOM05D001390 ORTHO05D001522 7.1e-87 325.5 490 43.1
Ca_23537_v3 Cicer arietinum L. HOM05D001390 ORTHO05D001522 3.5e-86 323.2 494 43.3
Medtr8g027685 Medicago truncatula HOM05D001390 ORTHO05D001522 6.0e-86 322.4 502 42.8
MELO3C022410.2 Cucumis melo HOM05D001390 ORTHO05D001522 1.5e-84 317.8 526 42.0
CsaV3_6G007160 Cucumis sativus L. HOM05D001390 ORTHO05D001522 5.6e-84 315.8 523 41.9
Phvul.006G113000 Phaseolus vulgaris HOM05D001390 ORTHO05D001522 9.5e-84 315.1 495 42.6
PGR031G0972 Punica granatum HOM05D001390 ORTHO05D001522 2.1e-83 313.9 493 42.0
CSS0049873 Camellia sinensis var. sinensis HOM05D001390 ORTHO05D001522 3.6e-83 313.2 497 42.7
Nitab4.5_0005989g0010 Nicotiana tabacum HOM05D001390 ORTHO05D001522 8.1e-83 312.0 497 42.5
VMungo0540G1222 Vigna mungo HOM05D001390 ORTHO05D001522 5.2e-82 309.3 505 41.8
Nitab4.5_0002326g0150 Nicotiana tabacum HOM05D001390 ORTHO05D001522 5.8e-81 305.8 497 42.3
Cc02_g39340 Coffea canephora HOM05D001390 ORTHO05D001522 7.6e-81 305.4 507 42.2
CAN.G986.5 Capsicum annuum HOM05D001390 ORTHO05D001522 6.4e-80 302.4 504 39.7
CSS0022005 Camellia sinensis var. sinensis HOM05D001390 ORTHO05D001522 3.5e-78 296.6 606 43.2
CSS0022600 Camellia sinensis var. sinensis HOM05D001390 ORTHO05D001522 7.8e-78 295.4 606 44.7
PGSC0003DMG400000108 Solanum tuberosum HOM05D001390 ORTHO05D001522 1.7e-77 294.3 504 39.5
Solyc01g095900.4 Solanum lycopersicum HOM05D001390 ORTHO05D001522 1.9e-76 290.8 500 38.8
Lalb_Chr15g0076271 Lupinus albus HOM05D001390 ORTHO05D001522 1.2e-75 288.1 494 39.5
Lalb_Chr18g0044451 Lupinus albus HOM05D001390 ORTHO05D001522 1.2e-75 288.1 503 39.6
Sopen01g039640 Solanum pennellii HOM05D001390 ORTHO05D001522 1.6e-75 287.7 505 38.6
Sed0004722 Sechium edule HOM05D001390 ORTHO05D001522 4.7e-75 286.2 507 39.4
Lj9C598G3 Lonicera japonica HOM05D001390 ORTHO05D001522 8.1e-75 285.4 498 41.4
Sc01g0002710 Simmondsia chinensis HOM05D001390 ORTHO05D001522 1.1e-74 285.0 500 39.6
PSO063G3385 Papaver somniferum HOM05D001390 ORTHO05D001522 5.2e-74 282.7 507 39.1
PSO170G5166 Papaver somniferum HOM05D001390 ORTHO05D001522 5.2e-74 282.7 491 39.7
Peaxi162Scf00786g00128 Petunia axillaris HOM05D001390 ORTHO05D001522 6.9e-74 282.3 502 41.2
TWI23G0337 Tripterygium wilfordii HOM05D001390 ORTHO05D001522 4.9e-72 276.2 417 42.2
EL10Ac1g00272 Beta vulgaris HOM05D001390 ORTHO05D001522 8.4e-72 275.4 495 38.2
Oeu035106.2 Olea europaea HOM05D001390 ORTHO05D001522 2.7e-70 270.4 499 39.9
Rhsim07G0004400 Rhododendron simsii HOM05D001390 ORTHO05D001522 7.8e-70 268.9 587 41.2
Cpa.g.sc96.12 Carica papaya HOM05D001390 ORTHO05D001522 1.3e-69 268.1 370 44.3
vmacro13159 Vaccinium macrocarpon HOM05D001390 ORTHO05D001522 5.6e-68 262.7 586 37.4
Migut.B01871 Erythranthe guttata HOM05D001390 ORTHO05D001522 1.5e-65 254.6 492 37.6
SalBow3G2381 Salvia bowleyana HOM05D001390 ORTHO05D001522 4.5e-65 253.1 501 37.3
Solyc05g050630.4 Solanum lycopersicum HOM05D001390 ORTHO05D001522 7.6e-65 252.3 489 37.0
Sopen05g029050 Solanum pennellii HOM05D001390 ORTHO05D001522 2.9e-64 250.4 489 36.8
AUR62004489 Chenopodium quinoa HOM05D001390 ORTHO05D001522 4.9e-64 249.6 516 36.8
DCAR_025251 Daucus carota HOM05D001390 ORTHO05D001522 4.9e-64 249.6 505 40.2
Peaxi162Scf00716g00016 Petunia axillaris HOM05D001390 ORTHO05D001522 2.4e-63 247.3 482 37.6
AUR62023464 Chenopodium quinoa HOM05D001390 ORTHO05D001522 2.1e-62 244.2 510 37.6
Aa31LG1G10660 Aethionema arabicum HOM05D001390 ORTHO05D001522 8.7e-61 238.8 492 38.2
PGSC0003DMG400007038 Solanum tuberosum HOM05D001390 ORTHO05D001522 3.7e-59 233.4 493 36.5
Actinidia10137 Actinidia chinensis HOM05D001390 ORTHO05D001522 8.1e-59 232.3 429 38.9
TPR.G15354 Trifolium pratense HOM05D001390 ORTHO05D001522 1.8e-58 231.1 485 36.7
MBI06_g08471_MAGBIO Magnolia biondii HOM05D001390 ORTHO05D001522 1.2e-57 228.4 557 35.9
Aqoxy5G04242 Aquilegia oxysepala HOM05D001390 ORTHO05D001522 3.8e-56 223.4 512 35.0
AT1G01320 Arabidopsis thaliana HOM05D001390 ORTHO05D001522 4.9e-56 223.0 493 38.3
BcaB03g13573 Brassica carinata HOM05D001390 ORTHO05D001522 1.1e-55 221.9 489 37.4
AL1G11130 Arabidopsis lyrata HOM05D001390 ORTHO05D001522 5.5e-55 219.5 485 37.3
Sp1g00960 Schrenkiella parvula HOM05D001390 ORTHO05D001522 2.7e-54 217.2 497 35.8
BolC5t28851H Brassica oleracea HOM05D001390 ORTHO05D001522 3.5e-54 216.9 490 36.1
C05p00630 Brassica napus HOM05D001390 ORTHO05D001522 7.9e-54 215.7 495 36.6
Thhalv10006538m.g Eutrema salsugineum HOM05D001390 ORTHO05D001522 3.9e-53 213.4 493 36.1
CARHR001120 Cardamine hirsuta HOM05D001390 ORTHO05D001522 6.7e-53 212.6 491 36.7
A10p00600 Brassica napus HOM05D001390 ORTHO05D001522 1.1e-52 211.8 492 36.4
Hund16711 Selenicereus undatus HOM05D001390 ORTHO05D001522 7.4e-52 209.1 511 33.9
Carub.0001s0090 Capsella rubella HOM05D001390 ORTHO05D001522 9.6e-52 208.8 485 36.7
Hund27200 Selenicereus undatus HOM05D001390 ORTHO05D001522 1.5e-49 201.4 513 33.5
BraA10t42338Z Brassica rapa HOM05D001390 ORTHO05D001522 2.6e-49 200.7 492 35.6
ECA236G1465 Erigeron canadensis HOM05D001390 ORTHO05D001522 3.0e-45 187.2 497 32.0
SGA_v2.0_scaffold24G10700 Striga asiatica HOM05D001390 ORTHO05D001522 1.5e-44 184.9 499 33.5
Zm00001eb306000 Zea mays HOM05D001390 ORTHO05D001522 1.5e-36 158.3 532 28.9
ATR0602G163 Amborella trichopoda HOM05D001390 ORTHO05D001522 1.2e-33 148.7 369 37.9
HanXRQChr04g0120181 Helianthus annuus HOM05D001390 ORTHO05D001522 4.5e-33 146.7 515 30.5
DCAR_005387 Daucus carota HOM05D001390 ORTHO05D001522 7.7e-33 146.0 491 30.1
CDE02G3153 Ceratophyllum demersum HOM05D001390 ORTHO05D001522 7.2e-31 139.4 518 27.4
CDE08G1208 Ceratophyllum demersum HOM05D001390 ORTHO05D001522 1.0e-24 119.0 360 33.6
Lsat_1_v5_gn_7_1141 Lactuca sativa HOM05D001390 ORTHO05D001522 1.3e-24 118.6 487 32.2
TPR.G22646 Trifolium pratense HOM05D001390 ORTHO05D001522 1.4e-18 98.6 271 32.5
GSVIVG01027120001 Vitis vinifera HOM05D001390 ORTHO05D001522 2.1e-14 84.7 92 51.1
COL.COLO4_05652 Corchorus olitorius HOM05D038954 ORTHO05D161260 4.5e-09 67.0 64 54.7
Os07g0422000 Oryza sativa ssp. japonica HOM05D001390 ORTHO05D001522 5.5e-07 60.1 59 49.2


User provided reference genes

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