Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 2.9e-28 127.9 65 100.0
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 2.9e-20 101.3 51 100.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 1.5e-16 89.0 63 76.2
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.6e-15 85.5 50 82.0
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 6.3e-15 83.6 49 85.7
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 4.1e-14 80.9 49 83.7
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.2e-13 79.3 50 76.0
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 3.4e-13 77.8 46 82.6
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 3.4e-13 77.8 49 77.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 3.4e-13 77.8 49 73.5
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 4.5e-13 77.4 49 79.6
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 4.5e-13 77.4 49 79.6
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 4.5e-13 77.4 49 71.4
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 7.6e-13 76.6 48 77.1
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.0e-12 76.3 49 75.5
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 1.3e-12 75.9 49 73.5
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.3e-12 75.9 49 75.5
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.7e-12 75.5 48 77.1
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.7e-12 75.5 48 77.1
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.7e-12 75.5 48 77.1
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.7e-12 75.5 50 72.0
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 1.7e-12 75.5 46 78.3
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.2e-12 75.1 49 75.5
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 2.2e-12 75.1 49 71.4
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.2e-12 75.1 49 73.5
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.8e-12 74.3 48 79.2
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 3.8e-12 74.3 49 69.4
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 3.8e-12 74.3 49 75.5
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 5.0e-12 73.9 50 70.0
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 5.0e-12 73.9 49 75.5
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.0e-12 73.9 49 73.5
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.0e-12 73.9 49 73.5
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 5.0e-12 73.9 50 72.0
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 6.5e-12 73.6 49 69.4
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 6.5e-12 73.6 50 74.0
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 6.5e-12 73.6 49 75.5
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 8.4e-12 73.2 49 73.5
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 8.4e-12 73.2 49 73.5
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.1e-11 72.8 49 67.3
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.4e-11 72.4 48 77.1
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.9e-11 72.0 49 69.4
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 2.5e-11 71.6 49 71.4
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 3.2e-11 71.2 49 69.4
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 3.2e-11 71.2 49 73.5
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 4.2e-11 70.9 48 72.9
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.2e-11 70.9 50 68.0
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 4.2e-11 70.9 49 69.4
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 4.2e-11 70.9 50 66.0
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 5.5e-11 70.5 47 72.3
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 5.5e-11 70.5 49 69.4
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 9.3e-11 69.7 49 69.4
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 1.6e-10 68.9 49 69.4
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.1e-10 68.6 49 69.4
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.1e-10 68.6 49 69.4
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 2.1e-10 68.6 47 72.3
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 2.7e-10 68.2 49 65.3
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 2.7e-10 68.2 49 67.3
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 3.5e-10 67.8 49 67.3
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 3.5e-10 67.8 49 69.4
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 3.5e-10 67.8 49 69.4
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 3.5e-10 67.8 49 69.4
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 3.5e-10 67.8 49 69.4
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.5e-10 67.8 47 72.3
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 3.5e-10 67.8 49 69.4
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 4.6e-10 67.4 47 66.0
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 4.6e-10 67.4 49 65.3
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.6e-10 67.4 49 65.3
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.6e-10 67.4 49 65.3
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.6e-10 67.4 49 65.3
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 4.6e-10 67.4 49 65.3
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 4.6e-10 67.4 49 67.3
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 7.9e-10 66.6 50 66.0
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 1.0e-09 66.2 49 67.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 1.0e-09 66.2 49 65.3
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.3e-09 65.9 47 68.1
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.3e-09 65.9 46 69.6
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.8e-09 65.5 49 61.2
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-09 65.1 48 66.7
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 2.3e-09 65.1 49 63.3
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 3.0e-09 64.7 46 69.6
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 3.0e-09 64.7 46 67.4
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 3.9e-09 64.3 49 61.2
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 3.9e-09 64.3 50 62.0
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 3.9e-09 64.3 49 65.3
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 5.1e-09 63.9 49 63.3
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 5.1e-09 63.9 49 63.3
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 6.7e-09 63.5 49 61.2
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 8.7e-09 63.2 49 63.3
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.1e-08 62.8 50 60.0
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.5e-08 62.4 48 64.6
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 2.5e-08 61.6 48 64.6
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 4.3e-08 60.8 49 59.2
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.3e-08 60.8 49 57.1
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 5.7e-08 60.5 45 64.4
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 1.3e-07 59.3 48 56.2
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.3e-07 59.3 48 56.2
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 1.3e-07 59.3 48 56.2
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 1.3e-07 59.3 48 56.2
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 1.6e-07 58.9 48 62.5
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 1.6e-07 58.9 48 62.5
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 1.6e-07 58.9 48 62.5
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 2.2e-07 58.5 42 71.4
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 2.2e-07 58.5 48 60.4
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 3.7e-07 57.8 45 57.8
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 3.7e-07 57.8 48 54.2
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 3.7e-07 57.8 45 57.8
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 8.2e-07 56.6 46 60.9
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.1e-06 56.2 46 60.9
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.1e-06 56.2 54 55.6
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 1.4e-06 55.8 34 70.6
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.4e-06 55.8 60 50.0
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.1e-06 54.3 38 68.4
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.1e-06 54.3 38 68.4
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.0e-06 53.1 49 51.0


User provided reference genes

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