Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 0.0e+00 1122.5 584 100.0
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 0.0e+00 1108.2 584 99.3
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.2e-188 662.9 586 63.8
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 2.0e-168 596.7 595 56.6
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 4.0e-161 572.4 683 50.7
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 8.9e-161 571.2 600 57.0
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 4.4e-160 568.9 593 56.8
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 8.6e-156 554.7 557 58.0
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 8.0e-154 548.1 593 52.8
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 9.8e-152 541.2 604 51.8
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 2.2e-151 540.0 596 55.7
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 7.1e-150 535.0 587 56.6
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 4.3e-147 525.8 587 54.7
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 9.5e-147 524.6 565 52.6
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 2.6e-144 516.5 590 52.4
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 1.3e-143 514.2 583 53.9
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 1.1e-139 501.1 591 54.0
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.5e-139 500.0 591 53.3
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 9.6e-139 498.0 592 50.3
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.8e-138 496.5 588 50.9
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 4.7e-138 495.7 592 51.9
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.2e-136 491.1 597 50.1
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 8.4e-135 485.0 590 49.2
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.2e-134 483.0 553 50.6
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 9.3e-134 481.5 589 48.6
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 7.8e-133 478.4 595 48.9
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.3e-132 477.6 586 49.8
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.3e-132 477.6 591 49.2
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.1e-131 474.6 597 48.4
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 2.1e-130 470.3 596 49.0
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 6.2e-130 468.8 590 48.8
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 9.9e-128 461.5 593 48.2
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 9.9e-128 461.5 593 48.2
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 4.9e-127 459.1 583 46.3
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.4e-126 457.6 587 48.6
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.9e-126 457.2 600 47.7
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 1.9e-126 457.2 606 48.0
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 2.4e-126 456.8 600 47.8
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.4e-126 456.8 600 47.8
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 3.2e-126 456.4 591 47.7
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 9.3e-126 454.9 593 46.4
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 2.7e-125 453.4 595 46.1
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.7e-125 453.4 600 48.8
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 3.5e-125 453.0 603 48.4
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 1.0e-124 451.4 594 47.6
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.3e-124 451.1 622 45.3
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.3e-124 450.3 594 46.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 5.1e-124 449.1 605 45.5
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 5.1e-124 449.1 607 47.4
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.1e-123 448.0 597 48.1
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.1e-123 448.0 636 46.1
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.5e-123 446.8 600 47.0
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 3.3e-123 446.4 595 48.9
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.4e-121 441.0 587 47.4
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 5.3e-121 439.1 586 49.0
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 5.3e-121 439.1 562 49.1
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.6e-120 436.8 598 48.5
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 8.1e-114 415.2 597 45.6
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 9.0e-113 411.8 592 43.9
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.2e-112 411.4 612 42.5
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 4.5e-112 409.5 628 43.3
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 6.5e-111 405.6 641 42.9
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.9e-110 404.1 555 46.7
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.7e-109 400.2 577 46.3
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 3.5e-109 399.8 588 46.4
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.0e-108 396.7 600 43.8
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.5e-107 394.4 608 42.1
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.6e-106 391.0 593 45.4
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 2.0e-104 384.0 595 42.9
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.3e-103 381.3 541 44.7
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 2.7e-101 373.6 641 41.3
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 7.9e-101 372.1 526 44.7
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.0e-100 371.7 519 44.9
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 8.7e-100 368.6 589 44.7
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.9e-99 367.5 533 43.3
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 7.4e-99 365.5 593 41.7
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.3e-97 359.4 488 46.7
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.2e-96 358.2 593 42.0
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.7e-95 354.4 595 41.3
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.9e-94 350.9 592 41.2
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 2.5e-94 350.5 517 46.2
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 3.6e-93 346.7 591 41.8
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.6e-93 346.3 552 43.8
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 4.6e-93 346.3 617 39.7
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 1.8e-92 344.4 602 40.5
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.1e-91 341.7 589 41.3
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.8e-90 337.0 584 39.6
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 4.8e-90 336.3 584 40.6
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 2.4e-89 334.0 584 38.9
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 3.1e-89 333.6 584 38.9
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 2.2e-87 327.4 590 40.2
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 6.5e-87 325.9 584 39.0
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.5e-87 325.5 496 44.2
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 9.4e-86 322.0 589 39.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.6e-85 321.2 383 50.1
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.6e-85 321.2 583 42.0
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.7e-85 320.5 588 39.6
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.7e-85 320.5 588 39.6
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.7e-85 320.5 588 39.6
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 7.9e-85 318.9 504 41.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.0e-84 318.5 588 38.3
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.0e-84 318.5 512 41.2
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.4e-84 318.2 582 38.7
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 2.3e-84 317.4 575 40.7
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 2.4e-81 307.4 632 37.0
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.7e-77 293.1 608 36.2
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 5.2e-76 289.7 327 52.9
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 8.8e-76 288.9 591 38.2
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.7e-74 283.5 451 43.5
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 5.3e-73 279.6 591 35.0
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 8.8e-68 262.3 231 61.5
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.0e-67 261.2 511 40.3
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 1.7e-66 258.1 588 35.2
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.8e-66 257.3 500 37.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.8e-65 254.6 596 33.2
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.4e-65 254.2 422 42.7
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 5.4e-65 253.1 611 33.9
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.3e-63 248.4 608 33.4
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 5.5e-62 243.0 602 33.1
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.1e-61 241.1 602 32.9
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-60 238.0 602 33.1
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.4e-59 233.4 605 33.1
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.2e-50 204.5 477 37.7
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 1.6e-48 198.4 357 40.9
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.9e-47 193.7 350 40.9
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.5e-46 191.8 613 28.5
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 2.3e-44 184.5 283 41.3
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 6.4e-42 176.4 396 31.6
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-41 175.3 567 30.3
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 4.1e-41 173.7 440 33.2
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.0e-40 169.9 375 36.5
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 3.6e-37 160.6 156 53.8
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 5.8e-35 153.3 144 54.9
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.7e-34 151.8 122 63.9
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 9.2e-33 146.0 424 33.7
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 3.9e-31 140.6 323 36.5
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 5.6e-30 136.7 118 61.0
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 7.3e-30 136.3 98 66.3
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.6e-29 135.2 116 55.2
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 2.4e-25 121.3 289 29.1
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.4e-20 105.5 134 47.8
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 4.4e-19 100.5 120 44.2
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 5.8e-19 100.1 161 39.1
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.3e-18 99.0 130 43.8
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 3.8e-18 97.4 101 53.5
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 1.9e-14 85.1 286 25.9
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 7.3e-14 83.2 123 44.7
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 3.9e-07 60.8 80 48.8
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 5.1e-07 60.5 80 48.8
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 1.5e-06 58.9 80 48.8
BolC7t44656H Brassica oleracea HOM05D004687 ORTHO05D016135 5.6e-06 57.0 52 57.7
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 7.4e-06 56.6 66 47.0


User provided reference genes

Program Settings