Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 3.2e-286 987.6 472 100.0
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 8.5e-271 936.4 453 98.5
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 8.3e-234 813.5 467 81.4
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 1.8e-233 812.4 459 83.7
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 3.2e-233 811.6 467 81.4
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 5.9e-232 807.4 468 80.3
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 5.9e-232 807.4 474 81.4
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 1.0e-231 806.6 468 80.8
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 1.3e-231 806.2 472 81.6
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.9e-230 802.4 472 81.8
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.5e-230 802.0 472 80.3
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 2.8e-229 798.5 472 79.7
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 1.1e-228 796.6 472 79.4
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 1.2e-227 793.1 472 79.9
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 1.5e-227 792.7 473 79.3
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 2.6e-227 792.0 473 79.3
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 3.4e-227 791.6 462 79.2
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 4.4e-227 791.2 480 78.3
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 2.2e-226 788.9 466 80.0
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 8.3e-226 786.9 467 79.2
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 1.1e-225 786.6 478 78.5
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 3.2e-225 785.0 472 77.5
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 5.4e-225 784.3 472 78.4
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 9.2e-225 783.5 472 78.4
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.6e-224 782.7 466 78.8
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 2.0e-224 782.3 472 77.1
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 7.8e-224 780.4 473 78.9
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 1.0e-223 780.0 461 80.0
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 1.0e-223 780.0 472 77.5
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 1.3e-223 779.6 473 77.8
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 1.3e-223 779.6 467 78.6
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 1.3e-223 779.6 467 79.7
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.7e-223 779.2 467 78.6
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 3.0e-223 778.5 466 77.5
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 6.6e-223 777.3 472 77.8
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 9.5e-222 773.5 472 76.7
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 1.2e-221 773.1 472 77.1
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 1.2e-221 773.1 472 78.0
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 3.1e-220 768.5 503 72.4
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 3.1e-220 768.5 472 76.7
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 4.0e-220 768.1 475 76.2
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 4.4e-219 764.6 472 74.8
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 8.3e-218 760.4 467 76.9
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.1e-217 760.0 496 73.6
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 1.1e-217 760.0 472 75.8
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 1.4e-217 759.6 499 73.5
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 2.4e-217 758.8 461 77.0
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 3.2e-217 758.4 474 75.7
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.1e-216 755.7 494 73.5
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 3.5e-216 755.0 469 74.6
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 4.6e-216 754.6 476 73.9
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 7.8e-216 753.8 467 76.2
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 1.0e-215 753.4 473 75.1
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 1.7e-215 752.7 470 74.7
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 2.3e-215 752.3 467 76.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 3.0e-215 751.9 453 79.7
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 3.0e-215 751.9 473 75.1
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 8.6e-215 750.4 460 76.5
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 1.1e-214 750.0 463 75.2
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 1.5e-214 749.6 476 74.2
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 4.3e-214 748.0 460 76.7
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 4.3e-214 748.0 460 76.5
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 7.3e-214 747.3 473 74.4
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 7.3e-214 747.3 465 74.4
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 9.5e-214 746.9 476 73.3
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 9.5e-214 746.9 462 76.4
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 1.2e-213 746.5 469 74.4
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 4.7e-213 744.6 463 75.8
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 4.7e-213 744.6 471 73.2
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 4.7e-213 744.6 472 73.7
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 1.8e-212 742.7 465 75.1
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 2.4e-212 742.3 450 76.2
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 4.0e-212 741.5 462 74.7
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 4.0e-212 741.5 476 73.3
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 6.8e-212 740.7 462 74.5
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 6.8e-212 740.7 458 74.5
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 8.9e-212 740.3 466 74.0
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 8.9e-212 740.3 467 75.2
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 2.0e-211 739.2 466 73.6
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 2.6e-211 738.8 462 74.5
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 9.9e-211 736.9 472 73.3
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 8.4e-210 733.8 460 74.1
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.2e-208 729.9 483 72.3
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 6.0e-208 727.6 472 73.3
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 3.0e-207 725.3 463 71.9
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 3.0e-207 725.3 468 72.6
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 3.9e-207 724.9 465 72.0
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 1.6e-205 719.5 457 73.5
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 9.0e-204 713.8 459 73.6
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 6.6e-199 697.6 473 71.9
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 5.6e-198 694.5 464 71.3
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 2.5e-190 669.1 431 73.1
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 3.5e-184 648.7 476 67.0
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 8.7e-183 644.0 456 64.5
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 1.9e-182 642.9 466 68.5
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 2.4e-180 636.0 488 64.8
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 9.0e-180 634.0 474 64.6
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 2.6e-179 632.5 453 65.3
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 4.3e-174 615.1 451 62.5
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 2.2e-173 612.8 385 76.9
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 2.5e-169 599.4 361 78.4
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 3.2e-169 599.0 471 62.8
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.4e-167 593.6 370 75.9
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 3.3e-142 509.2 311 76.5
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 2.2e-138 496.5 484 56.0
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 2.0e-126 456.8 273 78.8
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 2.9e-122 443.0 460 48.7
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 2.8e-112 409.8 479 46.3
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 2.4e-108 396.7 278 69.8
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 2.3e-103 380.2 471 45.9
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.3e-82 310.5 451 39.2
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 6.5e-45 186.0 226 43.4
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 1.6e-43 181.4 100 82.0
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 4.4e-33 146.7 95 72.6
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 4.4e-33 146.7 95 72.6
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 4.4e-33 146.7 95 72.6
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 4.4e-33 146.7 95 72.6
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 5.5e-28 129.8 280 31.4
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 6.3e-24 116.3 87 59.8
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 1.4e-18 98.6 72 62.5
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 1.8e-10 71.6 43 79.1
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 2.2e-08 64.7 58 53.4
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 2.8e-08 64.3 40 67.5
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.9e-08 63.5 41 78.0


User provided reference genes

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