Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 6.5e-199 697.2 355 100.0
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 2.8e-178 628.6 343 93.3
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 6.3e-178 627.5 347 88.8
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 8.0e-173 610.5 347 86.2
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 8.9e-172 607.1 344 86.6
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 7.5e-171 604.0 347 85.9
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.3e-170 603.2 344 86.3
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 2.2e-170 602.4 344 84.9
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 3.7e-170 601.7 344 84.6
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 4.9e-170 601.3 344 85.8
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 4.9e-170 601.3 344 84.9
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 6.4e-170 600.9 344 84.9
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 6.4e-170 600.9 344 85.8
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 8.3e-170 600.5 344 86.0
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 1.4e-169 599.7 344 85.2
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.4e-169 599.7 344 85.2
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.4e-169 599.7 344 85.5
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 3.2e-169 598.6 347 83.9
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 5.4e-169 597.8 344 85.2
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 7.0e-169 597.4 344 85.5
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 2.0e-168 595.9 344 84.9
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 2.7e-168 595.5 343 84.5
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 2.7e-168 595.5 344 84.6
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 2.7e-168 595.5 344 84.6
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 2.7e-168 595.5 344 84.0
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 3.5e-168 595.1 344 83.7
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 4.6e-168 594.7 344 84.3
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 6.0e-168 594.3 344 83.4
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 6.0e-168 594.3 344 84.9
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.0e-168 594.3 345 84.1
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 6.0e-168 594.3 344 84.6
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 6.0e-168 594.3 347 84.4
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-168 594.0 345 84.1
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 1.7e-167 592.8 341 84.8
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.3e-167 592.4 345 84.1
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 3.0e-167 592.0 344 83.1
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 3.9e-167 591.7 347 82.4
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 5.0e-167 591.3 339 85.5
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 1.5e-166 589.7 344 84.0
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 1.5e-166 589.7 344 84.9
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 2.5e-166 589.0 344 83.4
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.5e-166 589.0 344 84.6
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 3.3e-166 588.6 344 83.1
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 3.3e-166 588.6 344 84.0
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 3.3e-166 588.6 344 84.0
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 3.3e-166 588.6 341 85.0
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 5.6e-166 587.8 347 81.8
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 7.3e-166 587.4 344 83.7
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 9.5e-166 587.0 344 82.8
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.2e-165 586.6 347 83.6
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 1.6e-165 586.3 344 82.8
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 1.6e-165 586.3 344 82.8
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 3.6e-165 585.1 344 83.1
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 8.0e-165 583.9 347 80.1
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 1.1e-164 583.6 347 81.8
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 1.8e-164 582.8 339 84.4
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 1.8e-164 582.8 339 84.4
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 1.8e-164 582.8 345 82.9
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.8e-164 582.8 340 83.5
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 2.3e-164 582.4 347 82.1
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 2.3e-164 582.4 344 83.7
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 4.0e-164 581.6 344 81.4
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.9e-164 580.5 359 80.5
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 1.2e-163 580.1 340 82.4
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.0e-163 579.3 336 84.8
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 2.6e-163 578.9 344 81.1
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 2.6e-163 578.9 344 81.1
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 3.4e-163 578.6 344 81.1
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 3.4e-163 578.6 344 80.2
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 4.4e-163 578.2 344 83.4
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 5.8e-163 577.8 344 83.1
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 7.5e-163 577.4 344 83.1
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.3e-162 576.6 345 81.4
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 2.2e-162 575.9 344 80.5
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 2.2e-162 575.9 344 80.2
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 2.9e-162 575.5 340 82.4
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 3.7e-162 575.1 345 81.2
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 4.9e-162 574.7 344 80.2
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 4.9e-162 574.7 345 81.4
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 1.1e-161 573.5 340 82.6
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 1.4e-161 573.2 368 78.5
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 1.9e-161 572.8 337 82.8
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 2.4e-161 572.4 344 80.5
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 4.1e-161 571.6 334 83.5
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 1.3e-159 566.6 357 79.0
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 1.3e-159 566.6 344 82.0
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 2.3e-159 565.8 331 83.1
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 3.9e-159 565.1 333 82.9
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.9e-158 562.8 344 78.5
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 7.3e-158 560.8 344 80.2
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 1.6e-157 559.7 344 78.5
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 2.8e-157 558.9 340 79.4
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 2.8e-157 558.9 390 74.1
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 1.1e-156 557.0 332 83.1
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.0e-156 555.1 347 77.8
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 5.2e-156 554.7 344 77.3
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 3.4e-155 552.0 344 76.7
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 3.4e-155 552.0 347 77.8
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 3.7e-154 548.5 347 77.8
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 8.3e-154 547.4 347 77.8
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 1.1e-153 547.0 347 76.9
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 7.8e-152 540.8 302 87.4
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 2.1e-149 532.7 302 85.4
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.8e-149 532.3 341 76.8
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 4.7e-149 531.6 302 85.4
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 4.7e-149 531.6 347 74.9
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.4e-148 530.0 302 85.1
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.8e-148 529.6 347 74.6
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 2.4e-148 529.3 344 74.7
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 3.1e-148 528.9 340 78.5
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 1.3e-146 523.5 302 84.8
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 4.6e-144 515.0 342 74.6
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 7.8e-144 514.2 308 79.9
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 1.3e-143 513.5 303 83.2
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.3e-143 513.5 292 84.6
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 5.1e-143 511.5 342 72.8
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.1e-142 510.4 343 72.6
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.3e-142 508.4 344 75.9
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 5.6e-142 508.1 351 71.5
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 5.6e-142 508.1 319 79.3
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.2e-141 506.9 341 75.1
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-140 503.8 341 72.4
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.1e-140 502.3 341 72.4
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 4.0e-140 501.9 342 71.3
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.6e-139 497.7 343 72.6
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.3e-138 496.9 335 73.1
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 2.4e-137 492.7 340 70.3
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 9.3e-137 490.7 347 72.0
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 1.2e-136 490.3 339 72.3
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 3.5e-136 488.8 284 84.5
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 8.7e-135 484.2 329 72.6
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.6e-133 478.8 344 72.1
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 1.2e-128 463.8 352 67.3
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.7e-128 462.6 311 73.0
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-126 456.4 341 66.6
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.9e-126 456.4 275 80.0
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 1.9e-121 439.9 292 75.0
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 1.2e-120 437.2 338 62.7
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.4e-118 427.9 339 64.6
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.6e-112 408.7 353 60.9
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 1.8e-108 396.7 234 82.5
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 3.8e-106 389.0 252 74.2
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 5.1e-103 378.6 347 55.3
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 8.8e-103 377.9 359 56.0
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.1e-92 344.4 206 79.6
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 9.1e-92 341.3 358 52.0
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.5e-91 339.0 465 43.4
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.3e-90 337.4 205 78.0
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 1.8e-84 317.0 357 49.6
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.8e-84 317.0 199 78.4
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 5.9e-75 285.4 354 44.9
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 4.7e-72 275.8 168 76.2
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 6.1e-72 275.4 357 42.9
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 1.8e-71 273.9 156 85.9
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 3.0e-71 273.1 239 59.4
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 6.3e-69 265.4 155 81.3
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 7.7e-67 258.5 161 82.6
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 6.1e-64 248.8 166 73.5
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 2.9e-58 229.9 252 53.6
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 4.7e-56 222.6 158 72.8
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 5.1e-42 176.0 97 86.6
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 1.1e-36 158.3 96 80.2
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 1.8e-31 141.0 86 79.1
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 8.4e-29 132.1 126 57.9
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 4.6e-27 126.3 242 33.9
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 1.3e-18 98.2 97 56.7
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 2.3e-18 97.4 168 39.9
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 3.0e-18 97.1 129 44.2
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 5.6e-17 92.8 74 62.2
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 1.5e-14 84.7 55 67.3
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 9.6e-09 65.5 94 41.5
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.3e-08 65.1 70 48.6
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 4.8e-08 63.2 42 66.7
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 8.1e-08 62.4 38 78.9
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 8.1e-08 62.4 32 81.2
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 1.4e-07 61.6 44 63.6
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 1.5e-06 58.2 30 83.3
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 1.0e-05 55.5 104 35.6


User provided reference genes

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