Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 5.2e-142 507.7 252 100.0
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 3.2e-115 418.7 212 96.2
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.4e-107 393.3 212 87.7
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 9.3e-107 390.6 212 86.8
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 6.0e-106 387.9 212 87.3
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 7.8e-106 387.5 212 86.8
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 1.0e-105 387.1 212 87.3
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.7e-105 386.3 213 87.8
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.7e-105 386.3 212 85.8
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.7e-105 386.3 212 84.9
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 3.0e-105 385.6 212 86.8
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 3.0e-105 385.6 212 85.8
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 6.6e-105 384.4 212 85.8
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 6.6e-105 384.4 212 86.3
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 8.7e-105 384.0 212 85.4
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-104 383.6 212 84.9
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.1e-104 383.6 212 85.4
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.5e-104 383.3 212 87.3
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-104 382.9 212 84.4
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 2.5e-104 382.5 212 85.4
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.3e-104 382.1 212 84.9
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 3.3e-104 382.1 212 86.3
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 4.3e-104 381.7 212 85.4
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 4.3e-104 381.7 212 84.9
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 4.3e-104 381.7 212 84.4
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 4.3e-104 381.7 226 81.4
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 4.3e-104 381.7 212 85.4
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 5.6e-104 381.3 212 85.4
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 7.3e-104 380.9 212 83.5
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 7.3e-104 380.9 225 81.8
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.6e-103 379.8 237 77.6
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 1.6e-103 379.8 210 86.7
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 4.8e-103 378.3 212 84.0
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 8.1e-103 377.5 212 83.5
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.8e-102 376.3 212 83.5
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.8e-102 376.3 212 84.0
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 4.0e-102 375.2 212 82.5
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 4.0e-102 375.2 212 83.0
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 4.0e-102 375.2 225 81.3
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 5.3e-102 374.8 212 83.5
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 5.3e-102 374.8 212 82.1
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 9.0e-102 374.0 212 84.0
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 9.0e-102 374.0 212 83.5
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 9.0e-102 374.0 212 84.0
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 9.0e-102 374.0 212 82.1
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.2e-101 373.6 212 83.0
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.2e-101 373.6 212 83.5
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-101 373.2 212 83.0
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 1.5e-101 373.2 212 82.1
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 2.0e-101 372.9 212 83.0
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 2.6e-101 372.5 212 83.0
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 3.4e-101 372.1 212 83.0
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.4e-101 372.1 212 83.0
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 4.5e-101 371.7 212 83.0
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 4.5e-101 371.7 214 83.6
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 5.8e-101 371.3 214 83.6
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.3e-100 370.2 213 83.1
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.3e-100 370.2 214 82.7
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.3e-100 370.2 212 83.0
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.2e-100 369.4 212 82.1
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.2e-100 369.4 212 82.1
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 2.9e-100 369.0 212 81.6
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 3.8e-100 368.6 213 82.6
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 4.9e-100 368.2 212 82.1
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 6.4e-100 367.9 212 81.6
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.4e-100 367.9 225 80.4
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 6.4e-100 367.9 212 80.2
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 6.4e-100 367.9 212 82.1
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 8.4e-100 367.5 217 83.9
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.4e-100 367.5 212 81.6
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-99 367.1 218 81.2
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-99 367.1 218 80.7
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.9e-99 366.3 213 82.2
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 2.4e-99 365.9 213 82.2
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 2.4e-99 365.9 212 80.7
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 3.2e-99 365.5 212 81.6
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.2e-99 365.5 214 80.8
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.2e-99 365.5 218 80.7
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 9.3e-99 364.0 212 78.8
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.6e-98 363.2 213 80.8
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 2.1e-98 362.8 250 70.8
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 4.6e-98 361.7 249 73.5
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.0e-97 360.5 212 80.2
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 1.0e-97 360.5 213 79.3
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 1.3e-97 360.1 212 79.7
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 3.0e-97 359.0 212 76.4
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 3.9e-97 358.6 242 71.5
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 5.1e-97 358.2 212 78.8
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 5.1e-97 358.2 212 80.7
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-96 357.1 212 76.4
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 1.9e-96 356.3 212 76.9
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 2.5e-96 355.9 229 76.4
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 2.5e-96 355.9 212 76.4
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 2.5e-96 355.9 245 71.0
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 3.3e-96 355.5 212 78.3
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 5.6e-96 354.8 211 81.0
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.6e-95 353.2 212 76.4
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 2.8e-95 352.4 212 77.8
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 1.1e-94 350.5 212 79.7
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.8e-94 349.7 212 79.7
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.3e-94 348.2 220 78.2
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 6.9e-94 347.8 212 81.1
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.2e-93 347.1 197 84.8
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 2.6e-93 345.9 212 80.2
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 2.6e-93 345.9 212 76.4
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 7.6e-93 344.4 225 76.9
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.3e-92 343.6 212 79.2
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 1.7e-92 343.2 210 74.3
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 4.9e-92 341.7 212 77.8
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 4.9e-92 341.7 212 78.8
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-91 340.5 225 74.7
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 2.5e-91 339.3 195 83.6
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 4.2e-91 338.6 210 74.8
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 4.2e-91 338.6 212 77.4
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.5e-91 338.2 212 72.6
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 7.1e-91 337.8 212 77.4
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.1e-91 337.8 189 85.2
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 2.1e-90 336.3 187 85.6
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 3.0e-89 332.4 187 85.6
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 5.1e-89 331.6 210 71.9
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-88 329.3 225 74.2
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 2.5e-88 329.3 212 71.2
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 4.3e-88 328.6 229 68.6
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 6.2e-87 324.7 212 76.9
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-86 323.6 225 73.3
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.8e-86 323.2 212 75.9
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.2e-85 320.5 234 65.4
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-85 320.1 231 68.8
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-84 316.6 225 69.8
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-84 316.6 225 69.8
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 1.7e-84 316.6 212 74.1
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.9e-84 315.8 231 68.0
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.1e-83 313.9 210 70.5
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.4e-83 313.5 197 78.2
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-83 312.8 231 68.0
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.2e-82 310.5 225 66.2
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.6e-82 310.1 213 69.5
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.6e-82 310.1 214 69.2
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.6e-82 310.1 214 69.2
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.6e-82 310.1 214 69.2
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 3.5e-82 308.9 213 69.0
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.0e-81 305.8 213 66.7
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 8.7e-81 304.3 230 65.7
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 2.2e-79 299.7 227 64.8
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.8e-79 299.3 214 67.3
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 6.9e-78 294.7 224 63.4
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-77 293.9 213 66.7
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 2.2e-76 289.7 213 66.2
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.0e-73 280.8 246 59.8
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.0e-73 280.8 232 62.1
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 5.1e-73 278.5 232 59.9
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 6.7e-65 251.5 160 76.9
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 9.1e-62 241.1 189 62.4
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.9e-60 236.1 133 84.2
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.6e-58 230.3 214 54.2
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.1e-56 224.2 127 80.3
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 5.5e-43 178.7 228 42.5
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 8.3e-39 164.9 124 64.5
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 3.8e-36 156.0 225 40.9
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-35 154.5 88 84.1
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 6.1e-34 148.7 82 85.4
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 8.0e-34 148.3 95 66.3
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 4.4e-32 142.5 99 73.7
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.2e-31 140.2 76 86.8
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 8.6e-28 128.3 124 58.9
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 9.8e-24 114.8 67 71.6
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 4.1e-22 109.4 221 32.1
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 2.0e-21 107.1 108 57.4
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 5.8e-16 89.0 70 58.6
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 2.4e-14 83.6 49 75.5
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 2.4e-14 83.6 49 75.5
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 3.2e-14 83.2 65 61.5
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 3.2e-14 83.2 60 65.0
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.9e-11 73.9 57 63.2
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 3.3e-11 73.2 57 61.4
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 1.5e-08 64.3 51 60.8
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.9e-07 59.3 40 60.0
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 1.4e-06 57.8 54 55.6


User provided reference genes

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