Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.496 Acer truncatum HOM05D003460 ORTHO05D004277 7.4e-50 200.3 105 100.0
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 3.4e-39 164.9 104 82.7
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 2.9e-38 161.8 104 79.8
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 6.5e-38 160.6 104 78.8
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 6.5e-38 160.6 104 79.8
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 1.4e-37 159.5 104 78.8
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 5.5e-37 157.5 104 79.8
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 5.5e-37 157.5 104 78.8
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 7.2e-37 157.1 104 78.8
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.2e-37 157.1 104 78.8
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.2e-37 157.1 104 78.8
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.6e-36 154.8 104 78.8
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.6e-36 154.8 104 78.8
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 2.3e-35 152.1 106 78.3
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 3.0e-35 151.8 105 76.2
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 3.9e-35 151.4 106 77.4
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 6.7e-35 150.6 104 78.8
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 6.7e-35 150.6 104 74.0
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 1.1e-34 149.8 104 75.0
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 1.5e-34 149.4 104 76.0
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 2.6e-34 148.7 104 75.0
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 3.3e-34 148.3 104 76.9
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 5.7e-34 147.5 104 75.0
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 5.7e-34 147.5 105 75.2
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 5.7e-34 147.5 105 75.2
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 5.7e-34 147.5 105 75.2
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 7.4e-34 147.1 104 75.0
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 7.4e-34 147.1 104 75.0
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 7.4e-34 147.1 104 74.0
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 1.3e-33 146.4 104 74.0
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 1.3e-33 146.4 104 73.1
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 1.7e-33 146.0 105 74.3
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 2.2e-33 145.6 104 73.1
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 2.2e-33 145.6 105 75.2
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 2.8e-33 145.2 104 73.1
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 3.7e-33 144.8 104 73.1
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 3.7e-33 144.8 104 73.1
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 4.8e-33 144.4 104 74.0
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 6.3e-33 144.1 109 72.5
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 1.4e-32 142.9 104 73.1
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 3.1e-32 141.7 104 71.2
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 4.1e-32 141.4 104 74.0
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 4.1e-32 141.4 104 73.1
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 7.0e-32 140.6 104 73.1
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 4.5e-31 137.9 104 70.2
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 1.0e-30 136.7 104 70.2
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.0e-30 136.7 104 70.2
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.0e-30 136.7 101 75.2
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 1.0e-30 136.7 104 70.2
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 1.7e-30 136.0 104 69.2
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 2.2e-30 135.6 104 70.2
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 2.2e-30 135.6 104 70.2
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 2.9e-30 135.2 104 69.2
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 5.0e-30 134.4 104 69.2
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 5.0e-30 134.4 104 69.2
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 6.5e-30 134.0 109 70.6
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 6.5e-30 134.0 104 68.3
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 8.5e-30 133.7 102 69.6
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 1.1e-29 133.3 104 70.2
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.1e-29 133.3 101 73.3
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 1.1e-29 133.3 101 73.3
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 1.9e-29 132.5 104 71.2
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 1.9e-29 132.5 104 70.2
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 4.2e-29 131.3 104 67.3
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 7.2e-29 130.6 100 72.0
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 7.2e-29 130.6 122 61.5
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 3.6e-28 128.3 104 63.5
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 4.7e-28 127.9 106 68.9
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 8.0e-28 127.1 101 68.3
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 1.4e-27 126.3 104 63.5
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 1.8e-27 125.9 104 67.3
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 2.3e-27 125.6 102 69.6
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 2.3e-27 125.6 104 67.3
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 3.0e-27 125.2 104 64.4
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 5.2e-27 124.4 100 68.0
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 5.2e-27 124.4 105 66.7
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 6.7e-27 124.0 105 65.7
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 6.7e-27 124.0 104 63.5
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 8.8e-27 123.6 105 66.7
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 8.8e-27 123.6 102 64.7
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 8.8e-27 123.6 104 63.5
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 1.1e-26 123.2 102 68.6
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 1.1e-26 123.2 109 68.8
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 1.5e-26 122.9 101 67.3
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 1.5e-26 122.9 104 67.3
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 1.5e-26 122.9 104 62.5
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 1.5e-26 122.9 103 66.0
GSVIVG01026827001 Vitis vinifera HOM05D003460 ORTHO05D004277 1.5e-26 122.9 95 71.6
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 4.4e-26 121.3 104 62.5
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 4.4e-26 121.3 104 64.4
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 5.7e-26 120.9 105 65.7
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 5.7e-26 120.9 100 67.0
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 7.5e-26 120.6 105 64.8
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 9.7e-26 120.2 106 63.2
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 1.3e-25 119.8 101 65.3
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 2.2e-25 119.0 105 64.8
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 2.2e-25 119.0 101 65.3
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 4.8e-25 117.9 104 61.5
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 6.3e-25 117.5 101 65.3
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 8.2e-25 117.1 79 77.2
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 8.2e-25 117.1 88 68.2
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 1.1e-24 116.7 108 60.2
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 2.4e-24 115.5 100 66.0
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 2.4e-24 115.5 104 63.5
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 7.0e-24 114.0 104 60.6
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 9.1e-24 113.6 110 60.0
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 9.1e-24 113.6 78 78.2
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.6e-23 112.8 105 62.9
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 1.6e-23 112.8 103 62.1
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 2.0e-23 112.5 105 60.0
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 2.0e-23 112.5 101 65.3
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 5.9e-23 110.9 109 65.1
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 1.3e-22 109.8 109 64.2
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 1.7e-22 109.4 97 69.1
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 2.2e-22 109.0 99 66.7
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 5.0e-22 107.8 107 61.7
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 6.5e-22 107.5 104 55.8
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 8.5e-22 107.1 97 68.0
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 8.5e-22 107.1 97 68.0
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 8.5e-22 107.1 97 68.0
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 8.5e-22 107.1 97 68.0
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 1.9e-21 105.9 97 68.0
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.5e-21 105.5 106 58.5
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 3.2e-21 105.1 97 67.0
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 3.2e-21 105.1 97 68.0
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 2.7e-20 102.1 101 64.4
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 3.6e-20 101.7 109 60.6
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 5.2e-19 97.8 108 59.3
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 5.2e-19 97.8 108 59.3
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 5.2e-19 97.8 108 59.3
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 5.2e-19 97.8 104 55.8
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 6.8e-19 97.4 124 45.2
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 8.8e-19 97.1 106 57.5
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 2.0e-18 95.9 104 52.9
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 7.5e-18 94.0 104 51.0
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 7.5e-18 94.0 104 51.9
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 1.3e-17 93.2 99 58.6
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 6.3e-17 90.9 110 55.5
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 6.3e-17 90.9 110 55.5
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 1.1e-16 90.1 104 53.8
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 7.0e-16 87.4 106 50.9
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 4.2e-13 78.2 107 50.5
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 8.0e-12 73.9 102 49.0
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 2.3e-11 72.4 106 48.1
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 3.0e-11 72.0 97 49.5
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.5e-10 69.7 108 49.1
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 4.4e-10 68.2 69 56.5
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 5.7e-10 67.8 104 50.0
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 7.5e-10 67.4 108 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 6.3e-09 64.3 70 51.4


User provided reference genes

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