Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 4.8e-88 327.8 165 100.0
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 7.5e-65 250.8 156 78.8
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 9.8e-65 250.4 157 79.6
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 9.8e-65 250.4 156 80.1
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 2.2e-64 249.2 156 79.5
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 2.9e-64 248.8 157 79.0
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.9e-64 248.8 164 76.2
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 4.9e-64 248.1 156 77.6
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.8e-63 246.1 156 76.3
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 2.4e-63 245.7 158 77.2
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 3.2e-63 245.4 159 76.7
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 7.0e-63 244.2 158 75.9
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.2e-63 243.8 160 77.5
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.6e-62 243.0 158 75.3
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.7e-62 242.3 160 76.9
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 2.7e-62 242.3 158 75.9
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 3.5e-62 241.9 156 75.0
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 3.5e-62 241.9 160 76.2
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.5e-62 241.9 160 76.2
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 7.8e-62 240.7 158 75.3
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.8e-62 240.7 160 76.2
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.7e-61 239.6 156 75.0
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 2.3e-61 239.2 156 75.0
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.9e-61 238.4 159 73.0
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.9e-61 238.4 156 75.6
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 5.0e-61 238.0 156 75.6
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 6.6e-61 237.7 156 75.0
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 8.6e-61 237.3 161 73.3
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 8.6e-61 237.3 186 65.1
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.1e-60 236.9 156 74.4
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 3.3e-60 235.3 155 75.5
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.2e-59 233.4 160 73.8
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.1e-59 232.6 153 72.5
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.1e-59 232.6 156 72.4
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 2.8e-59 232.3 156 70.5
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 3.6e-59 231.9 157 73.2
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 6.2e-59 231.1 166 70.5
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.3e-58 229.2 157 72.6
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 4.0e-58 228.4 159 71.7
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 6.8e-58 227.6 157 72.6
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.2e-57 226.9 159 72.3
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.5e-57 226.5 157 71.3
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 1.5e-57 226.5 128 84.4
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.5e-57 226.5 159 72.3
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.5e-57 226.5 158 69.6
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 2.0e-57 226.1 158 70.9
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 2.0e-57 226.1 160 71.9
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 2.6e-57 225.7 155 71.6
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 2.6e-57 225.7 159 71.7
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 7.5e-57 224.2 159 68.6
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 7.5e-57 224.2 159 71.1
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 9.8e-57 223.8 159 73.6
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 3.7e-56 221.9 160 69.4
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.1e-55 220.3 157 71.3
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 1.9e-55 219.5 156 70.5
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 3.2e-55 218.8 156 71.2
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 3.2e-55 218.8 159 70.4
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 7.0e-55 217.6 158 67.7
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 9.2e-55 217.2 160 67.5
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 9.2e-55 217.2 156 69.2
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.6e-54 216.5 157 69.4
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 3.5e-54 215.3 159 70.4
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 3.5e-54 215.3 163 66.9
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 7.8e-54 214.2 157 68.8
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 7.8e-54 214.2 128 78.1
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.0e-53 213.8 159 70.4
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.0e-53 213.8 156 68.6
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.3e-53 213.4 224 52.2
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 5.0e-53 211.5 161 68.9
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 1.1e-52 210.3 162 67.9
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.1e-52 210.3 149 69.1
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.3e-52 208.8 131 75.6
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 2.8e-51 205.7 161 64.6
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 2.8e-51 205.7 155 65.8
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 8.1e-51 204.1 163 65.6
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 8.1e-51 204.1 163 63.8
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 5.2e-50 201.4 161 65.2
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 5.2e-50 201.4 162 64.8
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 6.8e-50 201.1 162 64.8
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.2e-49 200.3 136 70.6
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.5e-49 199.9 163 63.8
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 1.5e-49 199.9 163 63.8
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 1.5e-49 199.9 150 65.3
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.0e-49 199.5 161 64.0
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 2.0e-49 199.5 156 60.3
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 2.6e-49 199.1 161 64.0
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 1.7e-48 196.4 168 61.9
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 4.9e-48 194.9 161 63.4
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 5.4e-47 191.4 136 70.6
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 7.8e-46 187.6 141 64.5
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 6.6e-45 184.5 132 69.7
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.5e-44 182.6 153 58.8
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 4.7e-43 178.3 164 58.5
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 5.2e-42 174.9 160 61.2
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.6e-41 172.6 150 59.3
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 5.8e-41 171.4 104 78.8
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 4.9e-40 168.3 161 56.5
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 1.9e-39 166.4 161 56.5
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 6.0e-38 161.4 112 70.5
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.5e-36 156.8 188 45.7
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 5.6e-36 154.8 94 77.7
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 9.6e-36 154.1 145 49.7
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 9.6e-36 154.1 138 58.0
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 2.1e-35 152.9 201 43.3
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 6.9e-34 147.9 168 45.8
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.5e-33 146.7 164 45.1
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 4.4e-33 145.2 106 70.8
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 8.4e-32 141.0 94 70.2
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 5.4e-31 138.3 89 73.0
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.6e-30 136.7 106 62.3
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.9e-28 129.8 91 74.7
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 3.3e-28 129.0 94 68.1
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 5.3e-26 121.7 99 62.6
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 2.7e-22 109.4 157 35.7
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 8.4e-16 87.8 60 71.7
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.9e-15 86.7 81 49.4
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 1.0e-13 80.9 54 61.1
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.3e-13 79.7 96 52.1
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 3.0e-13 79.3 51 78.4
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 3.0e-13 79.3 45 73.3
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 7.4e-12 74.7 83 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.3e-08 63.9 139 30.9
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 1.9e-07 60.1 31 77.4
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 4.6e-06 55.5 45 51.1


User provided reference genes

Program Settings