Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.9e-105 386.0 206 100.0
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 4.2e-41 172.2 189 54.0
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.7e-37 160.2 146 58.2
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 2.2e-37 159.8 154 53.2
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 8.3e-37 157.9 162 52.5
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.4e-36 156.4 171 50.3
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.4e-36 156.4 179 46.9
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 3.1e-36 156.0 163 50.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 5.4e-36 155.2 166 51.2
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 9.1e-36 154.5 173 48.0
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 5.9e-35 151.8 200 47.0
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 5.9e-35 151.8 170 50.6
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 7.7e-35 151.4 209 44.5
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.0e-34 151.0 185 47.6
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.7e-34 150.2 170 50.0
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.7e-34 150.2 174 47.7
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 6.5e-34 148.3 213 47.4
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.1e-33 147.5 170 50.6
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.5e-33 147.1 166 47.6
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 1.9e-33 146.7 179 43.6
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 2.5e-33 146.4 209 46.9
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.3e-33 146.0 167 47.3
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.2e-33 145.6 178 46.6
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 7.2e-33 144.8 196 44.9
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 7.2e-33 144.8 164 50.0
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 7.2e-33 144.8 159 49.1
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-32 143.7 178 46.1
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.7e-32 142.1 178 46.1
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 6.1e-32 141.7 153 46.4
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 6.1e-32 141.7 180 45.6
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 6.1e-32 141.7 167 46.1
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.4e-31 140.6 164 45.7
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.4e-31 140.6 174 44.8
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.4e-31 140.6 169 46.2
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-31 139.8 180 45.0
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.3e-31 139.8 167 48.5
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 6.8e-31 138.3 156 47.4
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.0e-30 136.7 191 44.0
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.0e-30 136.7 189 41.8
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 5.7e-30 135.2 151 49.0
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 7.5e-30 134.8 153 47.7
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 9.8e-30 134.4 172 44.8
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 2.2e-29 133.3 196 42.3
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 2.2e-29 133.3 174 45.4
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 4.9e-29 132.1 150 46.0
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 4.9e-29 132.1 152 46.7
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 4.9e-29 132.1 154 44.2
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 6.3e-29 131.7 173 43.4
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 6.3e-29 131.7 174 42.5
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 8.3e-29 131.3 165 43.0
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 8.3e-29 131.3 148 47.3
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 1.4e-28 130.6 154 43.5
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 1.4e-28 130.6 156 45.5
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 3.1e-28 129.4 150 41.3
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 3.1e-28 129.4 169 42.6
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 4.1e-28 129.0 178 43.3
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 9.2e-28 127.9 165 44.8
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 1.2e-27 127.5 179 46.4
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 4.5e-27 125.6 175 39.4
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 4.5e-27 125.6 175 39.4
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 5.9e-27 125.2 147 46.3
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 1.0e-26 124.4 155 44.5
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.0e-26 124.4 150 43.3
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.0e-26 124.4 153 44.4
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 1.3e-26 124.0 151 43.0
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.3e-26 124.0 147 43.5
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.7e-26 123.6 148 41.2
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.7e-26 123.6 156 46.2
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-26 123.6 155 45.8
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.3e-26 123.2 169 39.1
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 2.9e-26 122.9 163 42.3
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.9e-26 122.9 175 39.4
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 3.8e-26 122.5 175 40.6
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 3.8e-26 122.5 175 40.6
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 6.6e-26 121.7 180 38.9
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 6.6e-26 121.7 191 43.5
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 1.1e-25 120.9 157 42.0
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.1e-25 120.9 187 40.1
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 1.1e-25 120.9 195 44.1
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 1.9e-25 120.2 200 38.5
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 2.5e-25 119.8 195 39.0
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 2.5e-25 119.8 157 41.4
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 2.5e-25 119.8 178 39.3
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 2.5e-25 119.8 154 41.6
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 4.3e-25 119.0 165 41.8
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 4.3e-25 119.0 168 40.5
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 7.3e-25 118.2 172 38.4
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 9.5e-25 117.9 161 43.5
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.6e-24 117.1 176 39.2
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 2.1e-24 116.7 180 40.0
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 2.1e-24 116.7 152 42.8
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.8e-24 116.3 164 43.3
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 3.6e-24 115.9 164 40.9
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 6.1e-24 115.2 174 36.8
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 8.0e-24 114.8 161 41.0
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.8e-23 113.6 194 37.6
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 2.3e-23 113.2 146 39.0
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 3.0e-23 112.8 188 39.4
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 8.9e-23 111.3 198 41.4
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 9.8e-22 107.8 164 39.0
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 4.9e-21 105.5 190 33.2
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 6.4e-21 105.1 215 36.3
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 8.3e-21 104.8 217 36.4
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.4e-20 104.0 157 37.6
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.2e-20 102.8 177 39.0
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 4.1e-20 102.4 165 37.6
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 1.2e-19 100.9 142 36.6
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 1.6e-19 100.5 207 35.3
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 6.0e-19 98.6 153 39.9
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 1.0e-18 97.8 138 39.1
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 1.0e-18 97.8 165 38.8
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 3.0e-18 96.3 147 36.7
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.5e-17 94.0 166 34.3
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 2.5e-17 93.2 151 36.4
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 2.5e-17 93.2 151 36.4
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.3e-17 92.8 100 50.0
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.3e-17 92.8 100 50.0
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.3e-17 91.7 135 41.5
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 9.5e-17 91.3 183 31.7
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.7e-16 89.0 144 39.6
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 6.8e-15 85.1 76 57.9
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.9e-15 84.7 151 37.1
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.9e-15 84.7 151 37.1
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.9e-15 84.7 142 38.7
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.6e-14 83.2 130 39.2
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 4.4e-14 82.4 187 30.5
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.7e-13 80.5 158 34.8
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 2.2e-13 80.1 119 41.2
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-13 79.7 99 44.4
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 2.9e-13 79.7 208 33.2
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 1.3e-10 70.9 87 48.3
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.7e-10 70.5 177 31.6
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 3.3e-09 66.2 100 34.0
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 3.3e-09 66.2 90 43.3
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 1.2e-08 64.3 40 67.5
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 3.1e-07 59.7 35 74.3
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 4.0e-07 59.3 112 36.6
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 1.5e-06 57.4 109 33.9


User provided reference genes

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