Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.2e-231 806.2 420 100.0
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 7.8e-167 590.9 422 74.6
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 8.6e-166 587.4 415 73.0
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 3.3e-165 585.5 418 74.2
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 4.3e-165 585.1 414 73.7
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 4.7e-164 581.6 419 71.1
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 6.2e-164 581.3 415 73.0
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 8.1e-164 580.9 420 73.1
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.0e-163 578.6 414 71.3
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.8e-162 574.7 418 70.8
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.7e-161 572.0 421 70.3
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 4.9e-161 571.6 414 70.8
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.4e-160 570.1 418 70.8
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.9e-160 569.7 418 70.8
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 9.2e-160 567.4 420 69.5
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 9.2e-160 567.4 421 71.5
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.1e-159 566.2 417 69.1
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.5e-157 560.1 420 70.0
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 5.6e-157 558.1 417 68.8
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.6e-156 556.6 420 69.5
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.6e-156 555.4 412 69.9
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.2e-154 550.4 420 69.5
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.5e-154 550.1 414 70.5
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 4.4e-154 548.5 426 66.9
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 9.9e-154 547.4 418 68.7
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.8e-153 545.4 419 69.0
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 3.8e-153 545.4 383 72.8
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-152 543.1 361 74.8
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.9e-152 543.1 361 74.8
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 2.4e-152 542.7 360 74.2
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.6e-151 540.0 357 74.8
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 7.8e-151 537.7 411 68.4
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.0e-150 537.3 354 74.6
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.3e-150 537.0 422 69.0
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.0e-150 535.8 361 73.7
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 3.9e-150 535.4 335 79.7
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 6.6e-150 534.6 394 71.6
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 8.6e-150 534.3 411 68.1
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.5e-149 533.5 415 66.7
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 2.5e-149 532.7 412 66.7
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 4.3e-149 531.9 361 74.2
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 4.3e-149 531.9 361 73.1
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 4.3e-149 531.9 357 75.1
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 4.3e-149 531.9 416 66.8
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 5.6e-149 531.6 418 67.0
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.2e-148 530.4 361 72.9
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.2e-148 530.4 358 72.9
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 2.8e-148 529.3 361 72.6
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 3.6e-148 528.9 426 66.0
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 6.2e-148 528.1 418 66.3
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.4e-147 526.9 419 66.8
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 4.0e-147 525.4 424 64.2
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 2.0e-146 523.1 416 65.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 4.4e-146 521.9 418 66.7
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 5.8e-146 521.5 418 66.7
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.7e-145 520.0 420 65.0
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 3.8e-145 518.8 419 65.2
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 3.8e-145 518.8 420 66.2
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 4.9e-145 518.5 409 67.2
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-144 517.3 430 65.3
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-144 516.9 357 72.3
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 1.4e-144 516.9 355 72.4
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 3.2e-144 515.8 480 58.3
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 4.2e-144 515.4 418 63.9
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 5.4e-144 515.0 411 64.7
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.1e-144 514.6 418 63.9
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.3e-144 514.2 418 63.6
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.3e-144 514.2 418 64.4
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.2e-143 513.8 419 64.4
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 2.1e-143 513.1 351 72.6
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.1e-143 513.1 419 63.7
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 2.7e-143 512.7 411 64.5
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.7e-143 512.7 411 64.7
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 4.6e-143 511.9 396 66.9
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 6.0e-143 511.5 419 63.2
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 6.0e-143 511.5 425 64.0
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 7.8e-143 511.1 357 72.5
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.3e-142 510.4 410 65.6
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.3e-142 510.4 418 63.4
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 3.0e-142 509.2 411 64.2
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.0e-142 509.2 418 63.4
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 3.0e-142 509.2 422 63.5
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 6.6e-142 508.1 424 64.2
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.1e-141 507.3 419 64.4
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.1e-141 507.3 418 63.9
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.5e-141 506.1 360 69.2
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 4.3e-141 505.4 413 61.7
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-140 503.8 411 64.0
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.6e-140 503.4 414 63.8
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.8e-140 502.7 415 64.6
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 3.6e-140 502.3 407 63.1
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 6.2e-140 501.5 419 62.5
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.1e-139 500.7 407 63.1
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.8e-139 500.0 409 64.5
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.1e-139 499.2 358 68.2
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.3e-139 498.4 407 65.4
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 5.3e-139 498.4 383 66.8
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 9.0e-139 497.7 408 64.7
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-137 493.8 411 64.5
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 1.3e-137 493.8 334 75.1
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.9e-137 492.7 396 65.9
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 8.4e-137 491.1 416 61.1
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.6e-135 486.9 360 66.7
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.6e-132 476.9 336 69.6
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 3.7e-132 475.7 336 69.9
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.4e-131 473.8 397 62.7
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.4e-128 463.8 335 69.9
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 9.3e-128 461.1 424 60.4
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 5.3e-123 445.3 330 68.8
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.8e-122 441.8 361 64.8
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.0e-118 431.0 394 59.6
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.0e-118 429.5 307 70.0
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.5e-114 417.2 375 58.7
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.2e-113 413.3 417 56.6
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.2e-113 413.3 330 65.2
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.9e-112 410.2 330 60.3
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 9.3e-112 407.9 364 59.1
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 3.0e-110 402.9 415 54.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 6.7e-110 401.7 295 69.5
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.3e-105 387.5 343 55.1
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.8e-105 386.0 335 57.3
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.2e-104 382.5 313 59.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.7e-100 370.5 285 66.7
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.4e-99 366.7 319 54.9
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.5e-93 347.4 425 49.2
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.8e-89 332.8 292 61.6
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 8.0e-79 298.5 336 50.6
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 5.0e-73 279.3 339 41.3
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.3e-70 270.4 332 42.5
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.3e-70 270.4 231 65.4
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.4e-69 266.2 315 43.8
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.8e-66 255.4 295 45.1
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-65 254.2 313 44.1
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-64 251.5 285 50.2
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.8e-63 246.9 234 58.5
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.0e-63 245.4 288 42.7
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 3.0e-62 243.4 301 41.2
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.8e-61 238.4 304 40.5
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.2e-60 237.3 179 64.2
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.3e-60 235.3 299 41.1
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-59 235.0 310 38.1
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 1.3e-57 228.0 157 74.5
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.0e-57 226.1 293 39.9
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-54 216.1 270 41.1
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 3.4e-53 213.4 208 59.1
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.2e-50 204.9 310 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.3e-49 200.7 153 60.1
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.9e-46 188.7 163 63.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.4e-45 186.4 332 35.2
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.3e-41 174.9 221 42.1
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.1e-41 172.9 145 66.2
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.3e-40 169.1 343 31.8
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.2e-39 168.3 143 58.7
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.1e-39 165.6 323 33.7
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-38 164.9 301 34.2
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.9e-38 162.2 315 29.5
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.8e-37 159.5 344 31.7
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.4e-35 154.1 317 29.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.3e-28 131.7 120 53.3
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-28 131.7 300 28.0
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-28 131.7 307 30.6
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 4.2e-27 126.7 77 81.8
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.9e-25 120.2 100 62.0
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.1e-25 119.8 296 28.7
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 6.6e-25 119.4 83 72.3
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-24 117.5 113 46.9
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.2e-23 112.8 252 28.2
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.1e-23 112.5 315 28.3
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 1.1e-22 112.1 331 27.5
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.1e-22 110.5 317 28.4
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-21 107.5 191 31.9
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.2e-20 104.4 326 30.1
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.1e-19 99.4 304 28.0
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.9e-16 91.3 304 28.0
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 4.3e-16 90.1 355 23.9
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 3.2e-11 73.9 64 59.4
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.9e-09 67.0 149 30.2


User provided reference genes

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