Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 1.8e-84 315.8 157 100.0
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 3.4e-59 231.9 147 76.2
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.7e-58 229.6 147 74.8
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 1.7e-58 229.6 147 74.1
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.5e-57 225.7 166 71.1
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.9e-56 220.7 153 69.9
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.3e-55 219.9 153 69.9
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.3e-55 219.9 153 69.9
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 8.7e-55 217.2 147 70.7
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.1e-52 210.3 149 71.1
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.2e-51 206.8 149 70.5
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.2e-51 206.8 160 64.4
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.5e-51 206.5 163 63.2
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 5.9e-51 204.5 153 67.3
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.0e-50 203.8 154 66.9
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 6.5e-50 201.1 155 62.6
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 3.2e-49 198.7 163 60.7
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.2e-49 198.4 154 59.7
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 9.4e-49 197.2 154 59.7
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.6e-48 196.4 153 68.6
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 3.6e-48 195.3 150 68.0
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.4e-47 193.4 154 65.6
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 1.8e-47 193.0 153 64.7
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.0e-47 192.2 154 59.7
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 5.1e-47 191.4 152 59.9
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 6.7e-47 191.0 149 63.8
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 4.4e-46 188.3 152 65.1
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.2e-45 186.0 142 64.1
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 6.3e-45 184.5 120 72.5
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.8e-44 183.0 153 59.5
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.8e-44 183.0 153 59.5
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 6.9e-44 181.0 170 57.6
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 2.0e-43 179.5 157 61.1
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 2.6e-43 179.1 151 62.9
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 7.7e-43 177.6 154 56.5
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.9e-41 172.9 170 55.3
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.5e-41 172.6 157 60.5
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 4.2e-41 171.8 153 61.4
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 4.2e-41 171.8 170 54.7
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 7.2e-41 171.0 142 62.7
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 7.2e-41 171.0 143 61.5
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.6e-40 169.9 154 57.8
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 2.1e-40 169.5 149 58.4
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 4.7e-40 168.3 134 64.2
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 1.0e-39 167.2 122 66.4
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.4e-39 166.8 152 56.6
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.3e-39 166.0 136 63.2
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.0e-39 165.6 144 55.6
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 5.2e-39 164.9 157 58.6
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.5e-38 163.3 155 57.4
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 3.3e-38 162.2 128 60.2
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 4.4e-38 161.8 154 55.8
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 4.4e-38 161.8 130 60.8
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 4.4e-38 161.8 164 54.3
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 7.4e-38 161.0 130 61.5
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 9.7e-38 160.6 146 57.5
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.1e-36 157.1 155 56.8
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.8e-36 156.4 158 47.5
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 1.2e-35 153.7 138 58.0
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.6e-35 153.3 166 56.6
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 4.5e-35 151.8 145 52.4
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 5.9e-35 151.4 145 52.4
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.5e-33 146.7 159 48.4
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 5.5e-33 144.8 142 54.9
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 9.4e-33 144.1 109 64.2
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.1e-32 142.9 144 53.5
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 2.1e-32 142.9 97 62.9
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 2.7e-32 142.5 143 53.8
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 6.1e-32 141.4 153 51.0
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 6.7e-31 137.9 147 55.1
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 3.3e-30 135.6 124 54.8
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 5.7e-30 134.8 127 51.2
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 5.7e-30 134.8 162 43.8
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.7e-29 133.3 162 43.2
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 4.8e-29 131.7 145 49.0
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 6.3e-29 131.3 127 49.6
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 3.1e-28 129.0 176 40.3
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.2e-27 127.1 115 56.5
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.6e-27 126.7 151 48.3
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.6e-27 126.7 149 47.7
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 2.0e-27 126.3 145 51.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 2.0e-27 126.3 144 51.4
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 2.7e-27 125.9 133 52.6
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 4.5e-27 125.2 135 50.4
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.9e-27 124.8 150 48.7
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 5.9e-27 124.8 141 51.1
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 7.7e-27 124.4 146 50.0
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 7.7e-27 124.4 146 50.0
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.0e-26 124.0 144 50.7
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.3e-26 123.6 111 56.8
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 5.0e-26 121.7 147 46.3
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 5.0e-26 121.7 118 55.9
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 8.5e-26 120.9 86 62.8
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 8.5e-26 120.9 159 43.4
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 4.2e-25 118.6 142 47.9
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 4.2e-25 118.6 143 51.0
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 5.5e-25 118.2 124 49.2
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 9.4e-25 117.5 123 52.0
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.7e-24 115.9 127 44.9
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 2.7e-24 115.9 152 44.1
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 4.7e-24 115.2 143 46.9
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.4e-23 113.6 135 49.6
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.8e-23 113.2 139 45.3
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.8e-23 113.2 139 45.3
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 2.3e-23 112.8 137 46.0
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 3.0e-23 112.5 137 46.0
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 6.8e-23 111.3 130 49.2
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 8.8e-23 110.9 103 55.3
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.2e-22 110.5 137 45.3
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.5e-22 110.2 141 43.3
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 2.0e-22 109.8 110 52.7
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 2.6e-22 109.4 125 48.8
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 3.7e-21 105.5 136 44.9
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 4.8e-21 105.1 80 60.0
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 9.1e-20 100.9 64 70.3
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.6e-19 100.1 83 54.2
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 4.5e-19 98.6 140 48.6
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.3e-18 96.3 162 38.9
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.9e-17 93.2 143 43.4
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 5.5e-17 91.7 140 47.9
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 5.5e-17 91.7 116 45.7
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.6e-16 90.1 139 43.9
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.6e-16 90.1 142 45.8
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 2.8e-16 89.4 137 40.1
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 8.0e-16 87.8 141 44.0
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 1.8e-15 86.7 141 43.3
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 2.3e-15 86.3 141 43.3
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 2.3e-15 86.3 141 43.3
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 2.3e-15 86.3 141 43.3
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 8.9e-15 84.3 93 50.5
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 9.8e-14 80.9 139 44.6
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.3e-13 80.5 124 40.3
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 6.3e-13 78.2 53 58.5
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.4e-12 77.0 139 38.8
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 1.8e-12 76.6 111 44.1
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 7.0e-12 74.7 62 58.1
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 7.0e-12 74.7 144 33.3
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 9.2e-12 74.3 63 58.7
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 9.2e-12 74.3 113 41.6
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 1.2e-11 73.9 78 56.4
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 4.5e-11 72.0 155 33.5
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 2.8e-08 62.8 79 32.9
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 2.6e-06 56.2 79 36.7


User provided reference genes

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