Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 5.6e-110 401.0 206 100.0
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 2.1e-96 355.9 204 85.8
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 7.4e-94 347.4 206 83.0
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.3e-93 346.7 206 82.5
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.7e-93 345.1 206 83.0
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.1e-92 343.6 203 83.3
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 2.4e-92 342.4 201 82.6
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 3.1e-92 342.0 206 82.5
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 4.0e-92 341.7 206 82.0
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 4.0e-92 341.7 206 82.5
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 5.3e-92 341.3 201 83.6
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 5.3e-92 341.3 206 81.6
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 3.4e-91 338.6 206 81.1
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 4.5e-91 338.2 206 80.6
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 5.8e-91 337.8 206 82.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 9.9e-91 337.0 206 82.0
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 9.9e-91 337.0 206 80.6
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 1.3e-90 336.7 206 81.1
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 2.2e-90 335.9 204 80.4
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.9e-90 335.5 206 79.6
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 3.8e-90 335.1 204 80.4
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 4.9e-90 334.7 206 79.6
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.1e-89 333.6 204 79.9
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.4e-89 333.2 204 80.4
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.4e-89 332.4 205 80.0
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 4.2e-89 331.6 204 78.9
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 7.1e-89 330.9 206 79.1
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 9.3e-89 330.5 204 77.9
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.6e-88 329.7 206 81.6
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 2.7e-88 328.9 206 80.1
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 6.0e-88 327.8 206 80.1
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.0e-87 327.0 204 78.9
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.0e-87 327.0 206 79.1
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.3e-87 326.6 206 79.6
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.3e-87 325.9 202 79.7
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 2.3e-87 325.9 202 79.7
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 3.9e-87 325.1 202 79.2
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 5.1e-87 324.7 206 80.1
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 8.7e-87 323.9 202 78.7
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 8.7e-87 323.9 204 77.5
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.1e-86 323.6 206 77.2
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.1e-86 323.6 202 80.2
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.9e-86 322.8 206 78.2
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.9e-86 322.8 194 81.4
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.9e-86 322.8 203 79.3
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-86 322.8 206 77.7
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.9e-86 322.8 206 78.2
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.5e-86 322.4 206 77.7
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 4.3e-86 321.6 206 77.7
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 4.3e-86 321.6 203 77.8
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 7.4e-86 320.9 206 76.7
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.3e-85 320.1 204 77.5
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.6e-85 319.7 204 77.9
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.6e-85 319.7 206 78.6
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.1e-85 319.3 206 76.7
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 2.1e-85 319.3 202 77.7
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.1e-85 319.3 206 77.7
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 3.7e-85 318.5 206 76.7
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 4.8e-85 318.2 204 76.0
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.4e-84 316.6 202 75.7
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.8e-84 316.2 200 80.0
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 2.4e-84 315.8 206 76.2
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 2.4e-84 315.8 200 78.0
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.1e-84 315.5 206 77.2
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 4.0e-84 315.1 206 76.2
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 5.3e-84 314.7 206 76.7
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 5.3e-84 314.7 201 77.1
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 6.9e-84 314.3 206 74.8
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 6.9e-84 314.3 206 76.7
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 6.9e-84 314.3 206 76.7
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 9.0e-84 313.9 206 77.2
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 9.0e-84 313.9 206 77.2
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 9.0e-84 313.9 206 77.2
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 9.0e-84 313.9 206 77.2
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 9.0e-84 313.9 206 78.2
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 9.0e-84 313.9 206 77.2
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 9.0e-84 313.9 206 77.2
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 9.0e-84 313.9 204 77.0
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 9.0e-84 313.9 206 76.2
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.2e-83 313.5 207 76.3
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.2e-83 313.5 206 76.7
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.5e-83 313.2 206 76.2
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.0e-83 312.8 206 77.7
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.0e-83 312.8 203 76.8
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.6e-83 312.4 203 76.4
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 3.4e-83 312.0 206 76.2
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.4e-83 312.0 206 77.2
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 3.4e-83 312.0 206 77.2
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 3.4e-83 312.0 199 77.9
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 3.4e-83 312.0 204 74.5
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 5.8e-83 311.2 203 76.8
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 7.6e-83 310.8 206 77.7
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 7.6e-83 310.8 204 77.5
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.3e-82 310.1 205 75.6
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.7e-82 309.7 203 75.4
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.2e-82 309.3 206 74.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.9e-82 308.9 199 76.9
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 4.9e-82 308.1 203 75.4
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 6.5e-82 307.8 206 73.3
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 6.5e-82 307.8 203 75.9
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.2e-81 305.4 201 75.1
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 9.3e-81 303.9 204 73.5
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-80 303.5 206 74.3
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.6e-80 303.1 204 73.5
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.1e-80 302.8 202 74.8
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.7e-80 302.4 200 75.0
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 2.7e-80 302.4 204 72.5
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.7e-80 302.4 202 74.3
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 3.5e-80 302.0 202 74.8
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 3.5e-80 302.0 206 73.8
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.3e-79 299.3 192 76.6
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.9e-79 298.5 191 78.0
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 5.1e-79 298.1 203 73.9
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 7.4e-78 294.3 185 80.0
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.4e-76 290.0 206 71.4
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.4e-76 290.0 206 71.4
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 4.1e-76 288.5 203 73.9
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.6e-75 285.8 202 72.3
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 7.6e-75 284.3 203 70.4
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 8.2e-69 264.2 202 65.8
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 3.4e-67 258.8 202 65.8
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 4.5e-67 258.5 206 68.0
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 7.7e-67 257.7 202 65.8
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 7.2e-65 251.1 202 63.4
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 7.4e-62 241.1 204 64.7
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.2e-59 233.8 203 58.1
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 7.7e-59 231.1 210 59.5
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 3.6e-56 222.2 206 60.7
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 5.7e-54 214.9 189 62.4
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.3e-53 213.8 216 52.8
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 3.7e-53 212.2 131 81.7
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.3e-53 211.5 204 55.9
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.1e-52 209.1 204 55.4
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 1.5e-49 200.3 130 78.5
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.1e-44 184.1 122 76.2
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.2e-43 180.6 165 55.2
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.2e-41 172.2 201 48.8
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 5.7e-38 161.8 202 46.5
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.3e-34 150.6 120 64.2
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.3e-34 150.6 90 80.0
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 5.5e-33 145.2 125 63.2
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 8.3e-29 131.3 128 57.0
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 8.6e-26 121.3 78 76.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.0e-18 97.8 105 52.4
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 8.6e-18 94.7 65 70.8
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 8.3e-13 78.2 186 35.5
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 7.8e-11 71.6 54 63.0
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 7.8e-11 71.6 135 39.3
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.3e-09 66.2 53 62.3
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.6e-08 63.9 63 54.0
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 4.0e-07 59.3 69 46.4
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.2e-07 58.9 43 60.5
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-06 57.8 73 43.8
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.6e-06 56.6 72 44.4


User provided reference genes

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