Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.5e-86 322.8 159 100.0
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.3e-58 229.2 139 75.5
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.4e-54 215.3 137 77.4
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.0e-51 206.1 141 74.5
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 2.3e-50 202.6 142 72.5
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.0e-47 193.7 143 70.6
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.4e-47 193.4 149 65.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 3.1e-47 192.2 144 66.0
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 3.1e-47 192.2 142 66.9
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-46 189.5 143 66.4
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.6e-46 189.1 144 65.3
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.4e-46 188.7 144 64.6
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.4e-46 188.7 143 66.4
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 3.4e-46 188.7 143 66.4
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 3.4e-46 188.7 143 68.5
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 3.4e-46 188.7 142 67.6
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 4.4e-46 188.3 143 65.7
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 4.4e-46 188.3 143 65.7
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 5.8e-46 188.0 143 65.0
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 5.8e-46 188.0 143 65.0
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 5.8e-46 188.0 144 65.3
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 5.8e-46 188.0 143 65.7
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 9.8e-46 187.2 143 64.3
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 9.8e-46 187.2 143 65.0
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.2e-45 186.0 143 63.6
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 2.9e-45 185.7 143 64.3
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 3.7e-45 185.3 143 64.3
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 3.7e-45 185.3 143 64.3
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 3.7e-45 185.3 143 64.3
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 4.9e-45 184.9 145 63.4
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 4.9e-45 184.9 147 66.7
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.9e-44 183.0 141 66.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 2.4e-44 182.6 148 66.9
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-43 180.3 139 65.5
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.0e-43 179.5 144 63.9
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 3.5e-43 178.7 141 64.5
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 3.5e-43 178.7 141 64.5
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.5e-43 178.7 146 65.8
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 3.5e-43 178.7 143 66.4
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 4.6e-43 178.3 144 62.5
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 4.6e-43 178.3 148 64.2
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 7.8e-43 177.6 145 66.2
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.0e-42 177.2 146 65.1
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-42 177.2 146 65.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.0e-42 177.2 116 75.9
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.7e-42 176.4 138 69.6
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 2.3e-42 176.0 140 65.0
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.3e-42 176.0 146 65.1
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 3.0e-42 175.6 122 71.3
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 5.0e-42 174.9 142 63.4
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 6.6e-42 174.5 144 64.6
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.5e-41 173.3 143 64.3
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 3.3e-41 172.2 143 64.3
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.3e-41 172.2 119 75.6
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 3.3e-41 172.2 149 63.1
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 4.3e-41 171.8 129 70.5
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 7.3e-41 171.0 117 73.5
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 9.5e-41 170.6 119 75.6
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 9.5e-41 170.6 143 62.2
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.2e-40 170.2 101 83.2
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.2e-40 170.2 143 62.2
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.2e-40 170.2 108 80.6
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.6e-40 169.9 151 60.9
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.6e-40 169.9 161 57.8
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.6e-40 169.9 136 66.2
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.1e-40 169.5 148 61.5
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 2.8e-40 169.1 100 84.0
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 2.8e-40 169.1 143 63.6
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 3.6e-40 168.7 142 64.1
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 3.6e-40 168.7 102 81.4
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 3.6e-40 168.7 142 62.7
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 6.2e-40 167.9 139 63.3
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.1e-39 167.2 140 62.1
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.1e-39 167.2 140 62.1
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.8e-39 166.4 140 65.7
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.3e-39 166.0 113 73.5
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.3e-39 166.0 125 68.8
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.1e-39 165.6 119 72.3
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 3.1e-39 165.6 119 72.3
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 3.1e-39 165.6 120 70.0
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 3.1e-39 165.6 146 61.6
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 3.1e-39 165.6 146 61.0
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 4.0e-39 165.2 147 56.5
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 4.0e-39 165.2 149 61.7
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 4.0e-39 165.2 125 68.8
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.2e-39 164.9 114 73.7
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 5.2e-39 164.9 108 77.8
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 5.2e-39 164.9 133 69.9
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 6.8e-39 164.5 154 58.4
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 8.9e-39 164.1 102 79.4
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.2e-38 163.7 122 71.3
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.5e-38 163.3 141 61.0
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.0e-38 162.9 150 62.0
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.0e-38 162.9 157 56.7
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.4e-38 161.8 148 57.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 4.4e-38 161.8 157 56.7
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 5.8e-38 161.4 101 78.2
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 5.8e-38 161.4 116 72.4
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 7.5e-38 161.0 149 58.4
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 9.8e-38 160.6 148 58.8
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 9.8e-38 160.6 128 66.4
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.7e-37 159.8 106 74.5
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.2e-37 159.5 149 58.4
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 3.7e-37 158.7 106 73.6
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 3.7e-37 158.7 106 73.6
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.4e-36 156.8 160 56.2
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 2.4e-36 156.0 100 78.0
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 5.4e-36 154.8 154 54.5
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 9.2e-36 154.1 145 57.2
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.2e-35 153.7 115 67.0
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.6e-35 153.3 106 70.8
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 4.6e-35 151.8 101 73.3
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.9e-33 146.4 105 68.6
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.9e-33 146.4 124 59.7
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.9e-33 146.4 150 56.7
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 3.3e-33 145.6 109 68.8
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 2.1e-32 142.9 91 75.8
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.7e-32 141.7 141 55.3
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 6.2e-32 141.4 142 53.5
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.4e-31 140.2 95 73.7
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.8e-31 139.8 142 52.8
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.1e-31 139.0 142 52.8
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 3.1e-31 139.0 132 54.5
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-30 137.1 92 75.0
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.2e-29 132.9 114 61.4
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 3.7e-29 132.1 133 53.4
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 9.2e-28 127.5 109 59.6
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 3.0e-26 122.5 95 66.3
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 5.6e-25 118.2 97 58.8
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 5.6e-25 118.2 96 61.5
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 2.8e-24 115.9 157 42.0
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 2.8e-24 115.9 105 56.2
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 4.7e-24 115.2 114 50.9
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 3.1e-23 112.5 123 51.2
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 5.2e-23 111.7 89 59.6
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 9.9e-22 107.5 84 63.1
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 1.2e-19 100.5 92 56.5
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.5e-19 99.0 134 41.8
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.3e-18 96.3 98 51.0
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.5e-17 92.8 66 65.2
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 9.0e-15 84.3 139 38.8
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.3e-10 69.7 48 66.7
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.3e-10 69.7 48 66.7
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.9e-10 68.9 53 58.5
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 8.7e-10 67.8 75 52.0
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.6e-09 64.3 48 62.5
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 9.6e-09 64.3 68 50.0
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-08 63.5 53 54.7
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.4e-07 59.7 73 46.6
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.4e-07 59.7 73 46.6
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.0e-07 58.9 48 56.2
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 4.5e-06 55.5 48 60.4


User provided reference genes

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