Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.1e-305 1051.6 544 100.0
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.1e-237 826.6 577 78.9
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 3.2e-197 692.2 635 63.5
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 2.2e-185 652.9 584 62.7
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 9.4e-181 637.5 629 58.2
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.1e-180 634.8 613 59.1
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 6.1e-180 634.8 614 59.1
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.5e-178 630.2 609 58.9
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 3.1e-176 622.5 582 61.5
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 3.5e-175 619.0 584 61.0
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.0e-174 617.5 615 57.6
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.7e-174 616.7 615 58.0
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 8.5e-174 614.4 624 57.4
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.5e-173 613.6 630 55.9
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.9e-173 613.2 578 60.6
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 3.2e-173 612.5 584 60.6
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 5.5e-173 611.7 603 57.7
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 5.5e-173 611.7 617 56.4
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 2.1e-172 609.8 618 58.1
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 6.1e-172 608.2 613 58.1
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 3.0e-171 605.9 627 55.8
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 6.7e-171 604.7 613 56.8
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.5e-170 603.6 618 55.8
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.7e-170 601.7 603 57.2
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 5.7e-170 601.7 630 55.7
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.2e-169 599.7 630 56.0
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 1.1e-168 597.4 618 55.0
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 1.4e-168 597.0 582 58.8
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.4e-168 596.3 630 55.4
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 4.5e-167 592.0 679 52.0
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 5.9e-167 591.7 647 55.0
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.0e-166 590.9 633 54.5
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.9e-166 589.3 622 55.8
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.5e-165 587.0 640 54.5
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 7.2e-165 584.7 563 57.9
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 2.1e-164 583.2 591 56.5
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 8.8e-163 577.8 618 55.0
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 3.4e-162 575.9 594 56.2
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 3.4e-162 575.9 607 55.8
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 4.4e-162 575.5 605 55.2
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.4e-160 569.7 558 57.0
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 2.4e-160 569.7 559 57.1
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 9.1e-160 567.8 594 55.6
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 9.1e-160 567.8 553 57.7
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 2.9e-158 562.8 580 55.2
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 5.0e-158 562.0 601 53.4
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 5.0e-158 562.0 604 55.0
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 6.6e-158 561.6 603 53.4
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 2.5e-157 559.7 592 55.7
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-157 559.7 592 55.4
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 5.5e-157 558.5 585 56.9
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 7.2e-157 558.1 579 55.8
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 7.2e-157 558.1 609 53.0
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 6.1e-156 555.1 605 53.1
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 8.0e-156 554.7 583 55.1
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 6.8e-155 551.6 596 55.5
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.2e-154 550.8 606 52.8
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 5.7e-154 548.5 587 53.7
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 7.5e-154 548.1 594 55.1
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 7.5e-154 548.1 577 54.4
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.3e-153 547.4 594 54.7
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 3.7e-153 545.8 588 54.4
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 3.7e-153 545.8 552 56.3
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 4.9e-153 545.4 573 54.5
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 6.3e-153 545.0 584 54.5
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.1e-152 544.3 607 53.0
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.1e-152 544.3 607 53.0
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-152 543.9 597 54.1
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.4e-152 543.9 599 54.8
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.1e-152 542.3 585 55.2
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.1e-152 542.3 584 55.3
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 9.2e-152 541.2 626 51.9
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.2e-151 540.8 595 54.1
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 4.5e-151 538.9 565 53.8
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 5.9e-151 538.5 629 52.5
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 5.0e-150 535.4 576 54.9
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 8.6e-150 534.6 596 53.4
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.9e-149 533.5 570 53.9
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 2.5e-149 533.1 618 51.8
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 4.3e-149 532.3 630 51.6
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.5e-149 531.2 570 56.5
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 2.1e-148 530.0 617 51.1
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.6e-148 529.3 584 53.4
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.8e-147 526.9 621 51.0
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 7.5e-146 521.5 634 50.2
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 8.3e-145 518.1 594 52.0
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-144 517.7 562 54.8
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.1e-144 517.7 580 51.9
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.9e-144 516.9 635 49.9
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 2.0e-143 513.5 539 56.8
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 3.5e-143 512.7 568 51.2
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 7.8e-143 511.5 516 56.4
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.0e-142 509.6 577 53.4
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 8.6e-142 508.1 499 58.1
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.1e-141 507.7 626 49.4
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.9e-141 506.9 577 53.4
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.9e-141 506.9 559 51.0
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 2.1e-140 503.4 594 49.0
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 2.8e-140 503.1 617 49.9
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 6.2e-140 501.9 591 53.0
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 1.8e-139 500.4 549 53.9
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.7e-135 486.5 527 54.5
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 2.1e-132 476.9 620 47.4
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 8.1e-132 474.9 533 51.2
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 7.5e-130 468.4 607 47.4
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 2.0e-122 443.7 503 52.7
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 4.3e-117 426.0 474 54.2
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 2.3e-110 403.7 605 45.5
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.3e-109 399.4 453 53.9
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 2.4e-107 393.7 553 43.0
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.1e-104 384.8 515 45.6
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.8e-99 367.5 547 43.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 2.8e-92 343.6 528 43.4
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 1.7e-89 334.3 398 52.8
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 5.0e-89 332.8 304 62.8
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 5.0e-89 332.8 267 66.3
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 8.7e-86 322.0 534 40.6
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 6.9e-75 285.8 361 46.8
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 4.5e-74 283.1 316 52.8
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.9e-73 280.4 361 50.4
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 7.2e-72 275.8 275 55.6
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 5.0e-65 253.1 341 45.2
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 5.5e-56 223.0 295 42.4
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 9.4e-56 222.2 309 40.1
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 1.7e-49 201.4 119 83.2
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.6e-45 187.6 121 74.4
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.4e-43 181.8 229 43.2
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 3.0e-38 164.1 149 64.4
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 9.8e-37 159.1 108 71.3
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 4.9e-36 156.8 233 41.6
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.2e-34 152.1 134 54.5
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.7e-34 151.0 165 53.3
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.9e-33 147.1 264 34.5
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.5e-32 144.4 138 58.7
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.3e-32 144.1 138 58.0
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 4.4e-29 133.7 182 45.1
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 5.8e-29 133.3 118 66.9
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 5.8e-29 133.3 170 48.2
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.4e-27 128.6 79 77.2
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.4e-27 127.9 256 34.0
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 3.2e-27 127.5 79 77.2
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 2.0e-26 124.8 99 60.6
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.5e-26 124.0 124 60.5
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.3e-25 121.3 179 40.2
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.1e-22 112.5 65 81.5
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.8e-22 111.7 173 38.2
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 4.0e-22 110.5 66 80.3
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 7.5e-21 106.3 170 35.9
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 9.8e-21 105.9 145 45.5
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.7e-20 104.0 154 42.2
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 1.4e-19 102.1 112 47.3
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 9.2e-19 99.4 70 70.0
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 2.7e-18 97.8 170 39.4
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 3.3e-16 90.9 93 48.4
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 9.5e-16 89.4 77 63.6
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 8.9e-14 82.8 97 52.6
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 5.8e-13 80.1 114 43.0
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 6.4e-12 76.6 108 37.0
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.1e-11 75.9 162 32.7
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 1.3e-09 68.9 49 65.3
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 1.9e-08 65.1 48 62.5


User provided reference genes

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