Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 6.0e-169 597.4 305 100.0
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 3.6e-97 359.0 287 67.6
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 4.4e-87 325.5 263 62.7
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.4e-85 320.5 264 62.9
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.1e-82 310.8 296 57.4
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 9.6e-82 307.8 297 59.6
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 3.1e-80 302.8 297 57.9
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.0e-80 302.4 297 57.9
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.0e-80 302.4 297 57.9
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 5.2e-80 302.0 286 60.1
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.4e-79 299.3 297 57.6
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.3e-78 297.4 289 58.1
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.1e-77 294.3 299 57.5
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.9e-77 293.5 282 58.9
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 7.1e-77 291.6 293 58.0
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 6.0e-76 288.5 302 53.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 6.0e-76 288.5 296 54.1
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.8e-76 288.1 299 57.2
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 5.1e-75 285.4 296 53.7
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.6e-74 282.0 299 55.5
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 7.3e-74 281.6 297 56.9
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.1e-73 280.0 294 55.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.4e-72 277.3 302 52.3
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.4e-72 276.6 300 55.0
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 2.0e-71 273.5 300 54.0
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 9.9e-71 271.2 297 52.9
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.8e-70 269.2 296 52.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.4e-69 266.5 276 55.1
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.6e-68 263.8 297 52.5
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.0e-67 261.2 304 54.6
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 7.4e-66 255.0 300 52.0
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 9.6e-66 254.6 286 52.8
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.1e-65 253.4 294 52.0
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.4e-64 250.8 302 53.0
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.4e-64 250.8 270 53.3
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.1e-64 249.6 288 50.7
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.3e-62 244.2 288 52.4
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 4.9e-62 242.3 296 49.0
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.9e-61 240.4 296 49.0
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.6e-60 237.3 300 51.3
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.8e-59 233.8 278 51.8
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 3.7e-57 226.1 252 53.2
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-56 224.6 265 52.1
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 5.3e-56 222.2 291 46.4
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.2e-55 221.1 278 51.4
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.3e-54 217.6 280 47.9
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 7.1e-53 211.8 282 48.6
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.0e-51 208.0 300 45.7
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.3e-51 206.8 282 48.6
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 6.7e-51 205.3 283 48.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 3.3e-50 203.0 283 49.5
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.0e-47 193.7 269 47.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.9e-47 192.2 286 44.1
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 1.0e-46 191.4 260 50.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.3e-46 191.0 282 45.4
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.9e-45 187.2 301 43.9
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.3e-43 180.3 265 46.8
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.9e-43 179.5 282 44.3
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.1e-43 179.1 257 47.5
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.4e-42 175.3 210 51.4
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 3.4e-39 166.4 267 44.2
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.0e-38 164.9 272 42.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 3.8e-38 162.9 259 43.6
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 5.0e-38 162.5 264 43.9
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.2e-37 159.8 292 41.1
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 5.5e-37 159.1 244 45.1
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 7.2e-37 158.7 218 47.7
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.1e-36 157.1 271 40.6
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 2.1e-36 157.1 287 40.8
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.8e-35 154.1 299 40.5
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 3.0e-35 153.3 300 39.0
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.0e-35 153.3 267 40.1
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 6.7e-35 152.1 299 39.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 6.7e-35 152.1 291 39.2
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.5e-34 151.0 315 38.7
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.6e-34 150.2 282 42.6
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 4.8e-33 146.0 274 40.1
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.4e-32 143.7 275 37.1
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 5.3e-32 142.5 291 38.8
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.6e-31 140.2 143 58.7
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.6e-31 140.2 143 58.7
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.6e-31 140.2 143 58.7
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.3e-30 137.9 632 25.3
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.8e-30 136.3 143 57.3
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.5e-30 135.6 143 57.3
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 6.5e-30 135.6 218 42.2
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.1e-29 134.8 247 40.9
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 9.4e-29 131.7 263 39.2
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.6e-28 131.0 284 35.9
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.4e-27 127.9 285 39.3
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 6.7e-27 125.6 193 44.0
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.5e-26 124.4 272 34.9
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 5.7e-26 122.5 303 35.0
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 7.4e-26 122.1 302 33.8
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 9.7e-26 121.7 277 34.3
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.3e-25 121.3 277 34.3
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.8e-25 120.2 235 38.7
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.4e-24 117.1 265 36.2
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 3.1e-24 116.7 301 36.5
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.2e-23 114.8 282 33.0
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.6e-23 114.4 111 58.6
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 2.6e-23 113.6 296 32.4
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.6e-23 113.6 259 36.7
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 3.5e-23 113.2 295 35.3
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.0e-22 111.7 290 32.8
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.3e-22 111.3 264 35.6
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.7e-22 110.9 176 43.2
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 6.5e-22 109.0 263 38.0
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.1e-21 108.2 224 37.1
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.9e-21 107.5 283 33.6
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 3.2e-21 106.7 218 38.5
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 4.2e-21 106.3 283 35.0
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.5e-21 105.9 263 33.8
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.2e-20 104.8 304 35.9
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.2e-20 104.8 248 35.1
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.6e-20 104.4 284 34.2
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.7e-20 103.6 281 34.9
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.6e-20 103.2 280 32.5
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 8.0e-20 102.1 240 36.7
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 8.8e-19 98.6 269 34.2
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.5e-18 97.8 291 32.3
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.5e-18 97.8 276 33.7
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 3.3e-18 96.7 78 66.7
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 4.4e-18 96.3 297 31.6
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 4.4e-18 96.3 259 33.6
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 9.7e-18 95.1 275 32.7
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-17 94.4 268 34.7
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 2.2e-17 94.0 231 39.0
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 4.8e-17 92.8 78 65.4
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 6.3e-17 92.4 137 51.1
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.1e-16 91.7 78 64.1
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.8e-16 90.9 268 33.6
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.4e-16 90.5 279 31.9
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.4e-16 90.5 284 30.6
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.1e-16 89.7 251 36.3
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.3e-16 89.4 155 43.9
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.6e-15 87.8 169 42.0
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 3.5e-15 86.7 77 63.6
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 3.5e-15 86.7 254 33.9
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.5e-15 86.7 122 45.1
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 7.7e-15 85.5 283 32.9
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.0e-14 85.1 272 29.8
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.8e-14 83.2 246 29.7
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 5.0e-14 82.8 71 66.2
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 5.0e-14 82.8 80 62.5
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 5.0e-14 82.8 264 31.4
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.1e-13 81.6 145 43.4
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.5e-13 81.3 80 61.2
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 3.2e-13 80.1 241 32.8
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 9.4e-13 78.6 74 62.2
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.1e-12 77.4 232 32.3
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 2.1e-12 77.4 329 28.9
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.7e-12 76.3 276 29.3
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 4.7e-12 76.3 277 29.6
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.0e-11 75.1 250 26.0
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.0e-11 75.1 208 32.7
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 3.0e-11 73.6 64 62.5
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 3.0e-11 73.6 169 36.7
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.2e-10 71.6 75 57.3
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.7e-10 69.3 213 33.3
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.2e-09 67.4 133 41.4
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.7e-09 66.6 119 39.5
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 4.8e-09 66.2 153 34.6
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 6.3e-09 65.9 96 40.6
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.1e-08 65.1 220 29.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.8e-08 64.3 109 42.2
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.4e-08 63.9 65 55.4
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 4.1e-08 63.2 81 45.7
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 7.0e-08 62.4 67 52.2
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.6e-07 61.2 82 46.3
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.5e-07 59.7 89 42.7
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 4.5e-07 59.7 151 39.1


User provided reference genes

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