Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 7.1e-161 572.0 794 100.0
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 2.0e-83 314.7 784 82.1
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 3.8e-82 310.5 775 78.8
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 8.6e-82 309.3 777 80.3
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 5.4e-76 290.0 781 78.1
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 5.0e-74 283.5 780 82.4
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.9e-73 281.6 785 82.0
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.8e-71 275.0 778 82.0
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 6.8e-71 273.1 781 78.4
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 6.8e-71 273.1 744 81.3
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 1.5e-70 271.9 784 77.3
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 7.5e-70 269.6 783 80.7
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.9e-69 267.7 778 80.3
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 2.9e-69 267.7 778 81.2
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 6.4e-69 266.5 780 71.8
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 2.4e-68 264.6 783 81.1
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.2e-67 262.3 780 78.5
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 1.0e-66 259.2 744 81.0
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 8.6e-66 256.1 786 80.5
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 1.1e-65 255.8 782 79.7
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 2.5e-65 254.6 786 73.7
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.5e-65 254.6 742 81.3
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 2.5e-65 254.6 785 80.0
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.3e-65 254.2 741 81.4
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.2e-64 252.3 782 79.5
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 3.6e-64 250.8 785 68.8
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 4.7e-64 250.4 782 76.2
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.8e-63 248.4 783 79.3
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 4.0e-63 247.3 740 81.1
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 1.2e-62 245.7 782 79.0
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.5e-62 245.4 783 79.8
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 9.8e-62 242.7 786 78.1
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 1.3e-61 242.3 776 79.5
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 2.2e-61 241.5 776 79.4
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 8.3e-61 239.6 781 77.2
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 2.1e-59 235.0 785 74.5
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 5.1e-58 230.3 776 79.4
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.9e-57 228.4 781 74.6
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 1.6e-56 225.3 785 69.7
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 8.1e-56 223.0 782 77.7
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 4.0e-55 220.7 782 77.7
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 4.0e-55 220.7 785 69.9
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 1.7e-53 215.3 786 74.2
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.1e-52 212.6 782 77.4
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.2e-52 211.1 784 76.3
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 5.4e-52 210.3 782 77.2
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 3.5e-51 207.6 777 74.9
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 3.9e-50 204.1 786 65.8
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 6.6e-50 203.4 792 63.1
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 8.6e-50 203.0 776 77.7
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 8.6e-50 203.0 309 71.8
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 2.5e-49 201.4 784 67.7
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 3.6e-48 197.6 793 65.7
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.1e-47 196.1 765 70.8
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 5.2e-47 193.7 750 80.3
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 6.8e-47 193.4 783 67.4
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 8.9e-47 193.0 779 74.1
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 2.0e-46 191.8 779 76.8
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 3.4e-46 191.0 777 65.1
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 2.9e-45 188.0 779 72.1
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 3.8e-45 187.6 779 76.8
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 3.8e-45 187.6 779 73.7
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 1.1e-44 186.0 784 73.9
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 1.4e-44 185.7 799 70.2
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 1.4e-44 185.7 776 77.8
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 3.2e-44 184.5 784 70.7
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 5.4e-44 183.7 799 65.8
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 5.4e-44 183.7 750 78.4
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.6e-43 182.2 290 78.6
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 6.0e-43 180.3 780 76.8
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 7.8e-43 179.9 742 79.0
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 1.3e-42 179.1 781 66.5
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 3.9e-42 177.6 780 66.8
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 3.9e-42 177.6 780 66.8
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 6.6e-42 176.8 783 70.5
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 8.7e-42 176.4 296 77.0
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 4.3e-41 174.1 747 73.6
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.4e-39 169.1 291 76.6
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 4.0e-39 167.5 286 78.0
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 5.8e-38 163.7 553 80.3
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.9e-36 158.7 302 70.5
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 2.1e-35 155.2 289 74.4
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 4.6e-35 154.1 727 75.4
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 6.0e-35 153.7 747 77.6
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 1.5e-33 149.1 289 74.0
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.4e-31 142.5 103 64.1
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 6.4e-29 133.7 733 75.0
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 7.1e-28 130.2 158 46.8
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 3.5e-27 127.9 147 47.6
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 4.6e-27 127.5 289 70.6
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 5.1e-26 124.0 257 60.7
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 4.8e-24 117.5 63 82.5
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.4e-23 115.9 148 43.2
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 5.3e-23 114.0 287 69.3
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 3.4e-22 111.3 145 42.8
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 2.2e-21 108.6 142 41.5
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.8e-21 107.8 256 73.4
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 5.5e-20 104.0 152 41.4
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 7.9e-19 100.1 65 66.2
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 3.0e-18 98.2 156 41.0
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 2.5e-17 95.1 104 46.2
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 9.6e-17 93.2 64 67.2
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 1.8e-15 89.0 94 44.7
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 3.2e-12 78.2 110 39.1
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 1.2e-11 76.3 65 58.5
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 3.0e-10 71.6 101 42.6
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 1.1e-07 63.2 69 47.8


User provided reference genes

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