Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3531 Acer truncatum HOM05D007618 ORTHO05D009606 1.8e-53 212.2 101 100.0
PGR142G1310 Punica granatum HOM05D007618 ORTHO05D009606 1.4e-42 176.0 100 83.0
Dinv14162 Davidia involucrata HOM05D007618 ORTHO05D009606 1.9e-42 175.6 100 83.0
Ciclev10029401m.g Citrus clementina HOM05D007618 ORTHO05D009606 9.3e-42 173.3 100 84.0
TAR376G0137 Trochodendron aralioides HOM05D007618 ORTHO05D009606 1.6e-41 172.6 100 82.0
Eucgr.I01514 Eucalyptus grandis HOM05D007618 ORTHO05D009606 2.1e-41 172.2 96 84.4
QL11p055874 Quercus lobata HOM05D007618 ORTHO05D009606 2.1e-41 172.2 96 86.5
Glyma.04G001200 Glycine max HOM05D007618 ORTHO05D009606 2.7e-41 171.8 100 81.0
MELO3C013504.2 Cucumis melo HOM05D007618 ORTHO05D009606 3.5e-41 171.4 100 82.0
CsaV3_6G010180 Cucumis sativus L. HOM05D007618 ORTHO05D009606 3.5e-41 171.4 100 82.0
VMungo1309G2136 Vigna mungo HOM05D007618 ORTHO05D009606 3.5e-41 171.4 96 84.4
Actinidia20565 Actinidia chinensis HOM05D007618 ORTHO05D009606 4.6e-41 171.0 99 81.8
FvH4_2g16570 Fragaria vesca HOM05D007618 ORTHO05D009606 4.6e-41 171.0 100 83.0
QL11p055571 Quercus lobata HOM05D007618 ORTHO05D009606 4.6e-41 171.0 96 85.4
RcHm_v2.0_Chr6g0280641 Rosa chinensis HOM05D007618 ORTHO05D009606 4.6e-41 171.0 100 83.0
ClCG02G010360 Citrullus lanatus HOM05D007618 ORTHO05D009606 1.0e-40 169.9 100 81.0
FAN15G3577 Fragaria x ananassa HOM05D007618 ORTHO05D009606 1.0e-40 169.9 100 82.0
Nn6g31724 Nelumbo nucifera HOM05D007618 ORTHO05D009606 1.8e-40 169.1 100 81.0
Cfa005346 Carpinus fangiana HOM05D007618 ORTHO05D009606 3.0e-40 168.3 100 82.0
Phvul.009G116000 Phaseolus vulgaris HOM05D007618 ORTHO05D009606 3.0e-40 168.3 100 80.0
FAN27G0591 Fragaria x ananassa HOM05D007618 ORTHO05D009606 3.9e-40 167.9 100 82.0
Sabra09G0129500 Salix brachista HOM05D007618 ORTHO05D009606 3.9e-40 167.9 100 81.0
GSVIVG01023981001 Vitis vinifera HOM05D007618 ORTHO05D009606 3.9e-40 167.9 100 79.0
Manes.04G067600 Manihot esculenta HOM05D007618 ORTHO05D009606 5.1e-40 167.5 100 80.0
Sed0023624 Sechium edule HOM05D007618 ORTHO05D009606 5.1e-40 167.5 100 80.0
Potri.009G165700 Populus trichocarpa HOM05D007618 ORTHO05D009606 6.7e-40 167.2 100 81.0
CiPaw.05G091300 Carya illinoinensis HOM05D007618 ORTHO05D009606 1.1e-39 166.4 95 84.2
Hma1.2p1_0271F.1_g108950 Hydrangea macrophylla HOM05D007618 ORTHO05D009606 1.1e-39 166.4 100 78.0
Prupe.8G177800 Prunus persica HOM05D007618 ORTHO05D009606 1.1e-39 166.4 100 80.0
TAR628G0843 Trochodendron aralioides HOM05D007618 ORTHO05D009606 1.1e-39 166.4 100 80.0
Lj1g0004638 Lotus japonicus HOM05D007618 ORTHO05D009606 1.5e-39 166.0 100 81.0
MBI08_g32524_MAGBIO Magnolia biondii HOM05D007618 ORTHO05D009606 1.5e-39 166.0 100 79.0
CANSAT64G2827 Cannabis sativa HOM05D007618 ORTHO05D009606 3.3e-39 164.9 96 83.3
Lalb_Chr08g0246841 Lupinus albus HOM05D007618 ORTHO05D009606 3.3e-39 164.9 100 77.0
Thecc.06G045200 Theobroma cacao HOM05D007618 ORTHO05D009606 4.3e-39 164.5 100 79.0
COL.COLO4_26755 Corchorus olitorius HOM05D007618 ORTHO05D009606 7.4e-39 163.7 100 78.0
vmacro02327 Vaccinium macrocarpon HOM05D007618 ORTHO05D009606 9.6e-39 163.3 98 80.6
Cc09_g10690 Coffea canephora HOM05D007618 ORTHO05D009606 1.6e-38 162.5 96 81.2
Glyma.06G000700 Glycine max HOM05D007618 ORTHO05D009606 2.1e-38 162.2 100 76.0
Gohir.D10G000400 Gossypium hirsutum HOM05D007618 ORTHO05D009606 2.8e-38 161.8 100 78.0
Gorai.011G000800 Gossypium raimondii HOM05D002478 ORTHO05D003331 2.8e-38 161.8 100 78.0
Potri.004G204700 Populus trichocarpa HOM05D007618 ORTHO05D009606 4.8e-38 161.0 100 78.0
arahy.Tifrunner.gnm1.ann1.DQ7S7B Arachis hypogaea HOM05D007618 ORTHO05D009606 6.3e-38 160.6 95 77.9
arahy.Tifrunner.gnm1.ann1.I7PWT1 Arachis hypogaea HOM05D007618 ORTHO05D009606 8.2e-38 160.2 95 77.9
Lsat_1_v5_gn_8_120421 Lactuca sativa HOM05D007618 ORTHO05D009606 8.2e-38 160.2 100 76.0
MD10G1139000 Malus domestica HOM05D007618 ORTHO05D009606 8.2e-38 160.2 100 79.0
arahy.Tifrunner.gnm1.ann1.ZSY7EJ Arachis hypogaea HOM05D007618 ORTHO05D009606 1.1e-37 159.8 95 77.9
Solyc01g112170.3 Solanum lycopersicum HOM05D007618 ORTHO05D009606 2.4e-37 158.7 96 78.1
Sopen01g054220 Solanum pennellii HOM05D007618 ORTHO05D009606 2.4e-37 158.7 96 78.1
arahy.Tifrunner.gnm1.ann1.U2J3P2 Arachis hypogaea HOM05D007618 ORTHO05D009606 5.3e-37 157.5 92 78.3
HanXRQChr14g0459071 Helianthus annuus HOM05D007618 ORTHO05D009606 6.9e-37 157.1 100 73.0
Sc18g0005980 Simmondsia chinensis HOM05D007618 ORTHO05D009606 6.9e-37 157.1 100 79.0
EL10Ac9g21249 Beta vulgaris HOM05D007618 ORTHO05D009606 9.0e-37 156.8 100 74.0
Migut.B00014 Erythranthe guttata HOM05D007618 ORTHO05D009606 9.0e-37 156.8 100 74.0
PSO541G4833 Papaver somniferum HOM05D007618 ORTHO05D009606 9.0e-37 156.8 100 75.0
Sabra04G0138200 Salix brachista HOM05D007618 ORTHO05D009606 1.2e-36 156.4 100 75.0
MSTRG.19948 Avicennia marina HOM05D007618 ORTHO05D009606 1.5e-36 156.0 100 74.0
SalBow1G1919 Salvia bowleyana HOM05D007618 ORTHO05D009606 2.0e-36 155.6 100 74.0
Nitab4.5_0000783g0170 Nicotiana tabacum HOM05D007618 ORTHO05D009606 7.6e-36 153.7 96 78.1
Peaxi162Scf00362g00251 Petunia axillaris HOM05D007618 ORTHO05D009606 1.0e-35 153.3 96 78.1
PSO675G2292 Papaver somniferum HOM05D007618 ORTHO05D009606 1.7e-35 152.5 100 73.0
Nitab4.5_0011212g0030 Nicotiana tabacum HOM05D007618 ORTHO05D009606 2.2e-35 152.1 96 77.1
SGA_v2.0_scaffold32G13341 Striga asiatica HOM05D007618 ORTHO05D009606 2.2e-35 152.1 95 74.7
Gohir.A10G000200 Gossypium hirsutum HOM05D002478 ORTHO05D003331 5.0e-35 151.0 121 65.3
AUR62011704 Chenopodium quinoa HOM05D007618 ORTHO05D009606 1.1e-34 149.8 108 68.5
Hund06167 Selenicereus undatus HOM05D007618 ORTHO05D009606 1.1e-34 149.8 100 71.0
Nn1g00573 Nelumbo nucifera HOM05D007618 ORTHO05D009606 4.2e-34 147.9 92 75.0
HPP92_022157 Vanilla planifolia HOM05D007618 ORTHO05D009606 9.3e-34 146.7 100 71.0
Zm00001eb002550 Zea mays HOM05D007618 ORTHO05D009606 1.3e-32 142.9 96 70.8
CDE05G0820 Ceratophyllum demersum HOM05D007618 ORTHO05D009606 3.9e-32 141.4 96 71.9
Duzib235G1428 Durio zibethinus HOM05D007618 ORTHO05D009606 1.5e-28 129.4 104 66.3
DCAR_022841 Daucus carota HOM05D007618 ORTHO05D009606 3.2e-26 121.7 100 63.0
ECA233G1377 Erigeron canadensis HOM05D007618 ORTHO05D009606 5.5e-26 120.9 70 82.9
Rhsim11G0196900 Rhododendron simsii HOM05D007618 ORTHO05D009606 7.2e-26 120.6 71 81.7
arahy.Tifrunner.gnm1.ann1.0TM8HZ Arachis hypogaea HOM05D007618 ORTHO05D009606 6.7e-24 114.0 64 79.7
Pp3c3_10700 Physcomitrium patens HOM05D007618 ORTHO05D009606 4.3e-23 111.3 96 54.2
Mapoly0032s0019 Marchantia polymorpha HOM05D007618 ORTHO05D009606 2.8e-22 108.6 91 54.9
SEGI_37348 Sequoiadendron giganteum HOM05D007618 ORTHO05D009606 2.5e-18 95.5 96 53.1
TPR.G29338 Trifolium pratense HOM05D007618 ORTHO05D009606 3.6e-17 91.7 58 75.9
TPR.G38509 Trifolium pratense HOM05D007618 ORTHO05D009606 2.6e-15 85.5 46 82.6
Psat5g000560 Pisum sativum HOM05D007618 ORTHO05D009606 4.4e-15 84.7 45 84.4
Nn5g30826 Nelumbo nucifera HOM05D007618 ORTHO05D009606 5.7e-15 84.3 72 58.3
Cc03_g12640 Coffea canephora HOM05D007618 ORTHO05D009606 2.0e-12 75.9 72 54.2
CBR_g37948 Chara braunii HOM05D007618 ORTHO05D009606 1.1e-10 70.1 96 38.5
PGSC0003DMG401014675 Solanum tuberosum HOM05D007618 ORTHO05D009606 1.9e-10 69.3 91 44.0
CBR_g30676 Chara braunii HOM05D007618 ORTHO05D009606 1.2e-09 66.6 94 38.3
Psat5g000680 Pisum sativum HOM05D007618 ORTHO05D009606 1.6e-09 66.2 34 88.2
Cre03.g200050 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 1.5e-07 59.7 89 34.8
MCO11G779 Micromonas commoda HOM05D007618 ORTHO05D009606 9.7e-07 57.0 89 34.8


User provided reference genes

Program Settings