Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 3.9e-128 461.5 227 100.0
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 3.6e-102 375.2 225 80.4
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 8.9e-101 370.5 225 78.7
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 1.9e-98 362.8 226 78.3
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 3.5e-97 358.6 225 77.8
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 7.8e-97 357.5 227 74.9
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 2.3e-96 355.9 229 73.8
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 3.9e-96 355.1 227 75.3
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 6.6e-96 354.4 227 76.2
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.1e-95 353.6 226 73.9
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 7.3e-95 350.9 227 75.8
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.1e-94 349.4 224 75.0
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 3.6e-94 348.6 220 75.0
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 4.8e-94 348.2 242 71.5
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 1.1e-93 347.1 224 74.6
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 9.0e-93 344.0 229 72.1
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.2e-92 343.6 229 73.4
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.0e-92 342.8 227 72.2
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 5.8e-92 341.3 225 72.4
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 5.8e-92 341.3 224 71.4
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 9.9e-92 340.5 230 72.6
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.3e-91 340.1 246 68.3
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 3.8e-91 338.6 224 71.0
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 3.8e-91 338.6 224 70.5
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 6.4e-91 337.8 227 70.5
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 6.4e-91 337.8 224 71.4
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 1.1e-90 337.0 222 73.9
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 1.4e-90 336.7 223 69.5
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 2.4e-90 335.9 228 70.2
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 2.4e-90 335.9 227 70.9
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 2.4e-90 335.9 219 71.2
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 3.2e-90 335.5 227 70.0
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 3.2e-90 335.5 229 70.7
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 4.2e-90 335.1 227 70.5
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 4.2e-90 335.1 225 71.1
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 5.4e-90 334.7 227 71.4
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 7.1e-90 334.3 229 70.7
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 7.1e-90 334.3 225 71.6
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 7.1e-90 334.3 224 71.4
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 9.3e-90 334.0 226 71.2
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 9.3e-90 334.0 227 70.0
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.1e-89 332.8 229 69.9
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 2.1e-89 332.8 217 73.3
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.7e-89 332.4 229 69.4
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 4.6e-89 331.6 229 70.7
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 4.6e-89 331.6 223 68.6
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 6.0e-89 331.3 223 69.1
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 6.0e-89 331.3 222 68.5
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 1.3e-88 330.1 224 69.2
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 3.0e-88 328.9 224 69.2
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 3.0e-88 328.9 225 69.8
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 3.0e-88 328.9 224 68.8
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 5.1e-88 328.2 227 69.2
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 6.6e-88 327.8 227 70.9
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 1.5e-87 326.6 230 71.3
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 2.5e-87 325.9 227 68.7
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 2.5e-87 325.9 221 70.1
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 7.3e-87 324.3 223 71.3
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 9.6e-87 323.9 224 69.6
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 9.6e-87 323.9 224 69.2
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 2.1e-86 322.8 222 69.8
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 2.1e-86 322.8 222 71.2
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 3.6e-86 322.0 232 69.0
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 3.6e-86 322.0 224 68.8
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 6.2e-86 321.2 221 68.8
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 6.2e-86 321.2 222 67.6
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.1e-85 320.5 229 69.9
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 2.4e-85 319.3 227 68.7
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 2.0e-84 316.2 230 69.1
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 2.6e-84 315.8 226 68.6
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 5.8e-84 314.7 221 67.4
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 9.9e-84 313.9 206 73.3
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 1.3e-83 313.5 220 67.3
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 2.9e-83 312.4 222 67.6
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 3.8e-83 312.0 221 66.5
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.1e-82 310.5 224 70.1
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 3.2e-82 308.9 221 67.4
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 9.3e-82 307.4 248 64.5
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 9.3e-82 307.4 229 64.6
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 2.7e-81 305.8 221 67.9
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.3e-80 303.5 248 63.7
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.9e-80 302.0 248 63.7
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.6e-73 280.0 162 79.6
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 3.3e-71 272.3 228 59.6
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 4.8e-70 268.5 219 60.3
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 4.8e-70 268.5 228 59.2
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 5.3e-69 265.0 158 77.2
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 6.9e-69 264.6 233 54.1
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 1.7e-67 260.0 162 75.9
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.8e-67 258.8 161 75.8
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 3.8e-67 258.8 221 56.6
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.5e-63 246.9 170 70.6
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.9e-63 246.5 234 56.4
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 3.3e-63 245.7 141 78.7
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 7.4e-63 244.6 175 65.1
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.6e-62 243.4 234 56.0
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 3.1e-61 239.2 226 54.4
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 5.3e-61 238.4 173 67.6
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-57 227.3 172 64.0
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 4.6e-57 225.3 226 49.6
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 6.1e-57 224.9 218 52.3
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 7.9e-57 224.6 168 63.1
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 1.4e-56 223.8 224 49.6
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 6.7e-56 221.5 222 50.0
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.1e-55 220.7 167 62.9
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 1.1e-50 204.1 122 74.6
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 4.2e-50 202.2 122 73.8
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 3.9e-48 195.7 143 64.3
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 3.9e-48 195.7 250 46.4
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 2.7e-41 172.9 108 73.1
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 1.5e-39 167.2 125 66.4
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.1e-37 161.0 144 59.7
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.9e-35 152.9 134 60.4
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 1.5e-34 150.6 146 59.6
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 9.1e-29 131.3 106 63.2
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 5.9e-28 128.6 225 37.3
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 1.6e-17 94.0 98 50.0
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 1.6e-17 94.0 98 50.0
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.5e-15 87.4 63 65.1
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 6.4e-14 82.0 52 71.2
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 6.4e-14 82.0 52 71.2
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 5.9e-12 75.5 47 72.3
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 2.3e-08 63.5 192 26.0
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.0e-07 60.5 227 25.6
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 2.0e-07 60.5 183 29.5
ClCG02G010000 Citrullus lanatus HOM05D006820 ORTHO05D008526 3.4e-07 59.7 29 86.2
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 2.2e-06 57.0 228 25.0
PSO384G1057 Papaver somniferum HOM05D003180 ORTHO05D003664 3.7e-06 56.2 173 28.3
PSO339G4170 Papaver somniferum HOM05D003180 ORTHO05D003664 8.3e-06 55.1 173 27.7
PSO384G2781 Papaver somniferum HOM05D003180 ORTHO05D003664 8.3e-06 55.1 173 27.7


User provided reference genes

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