Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 2.6e-95 352.1 182 100.0
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 4.7e-68 261.5 175 80.0
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 1.7e-54 216.5 175 69.7
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 3.6e-52 208.8 175 65.7
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 4.7e-52 208.4 180 64.4
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 1.8e-51 206.5 175 64.6
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.3e-51 206.1 175 65.1
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 2.3e-51 206.1 175 65.7
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.3e-51 206.1 175 66.3
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.1e-51 205.7 175 66.3
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 3.1e-51 205.7 175 66.3
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 4.0e-51 205.3 175 65.7
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 5.2e-51 204.9 180 65.0
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 1.5e-50 203.4 175 64.6
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.5e-50 203.4 177 63.8
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.5e-50 203.4 175 64.6
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 3.4e-50 202.2 175 63.4
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.4e-50 202.2 175 64.0
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.4e-50 202.2 175 64.0
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 9.8e-50 200.7 175 62.3
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 9.8e-50 200.7 175 65.1
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 1.7e-49 199.9 175 61.7
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 1.7e-49 199.9 175 64.6
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 2.2e-49 199.5 175 62.3
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.2e-49 199.5 175 65.1
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 2.9e-49 199.1 175 63.4
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 2.9e-49 199.1 175 64.6
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 3.7e-49 198.7 184 63.0
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 4.9e-49 198.4 175 61.1
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 6.4e-49 198.0 175 65.1
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 6.4e-49 198.0 175 65.1
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 8.3e-49 197.6 175 65.1
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 1.1e-48 197.2 175 63.4
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 1.1e-48 197.2 175 65.1
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 1.1e-48 197.2 175 61.7
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 1.4e-48 196.8 180 62.8
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 2.4e-48 196.1 175 60.0
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 3.2e-48 195.7 174 61.5
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 3.2e-48 195.7 124 78.2
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 3.2e-48 195.7 180 62.2
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 4.1e-48 195.3 175 61.7
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 7.0e-48 194.5 189 62.4
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 7.0e-48 194.5 175 62.3
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 9.2e-48 194.1 175 63.4
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.2e-47 193.7 175 61.7
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.0e-47 193.0 180 60.6
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 2.7e-47 192.6 175 63.4
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 3.5e-47 192.2 175 60.0
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 3.5e-47 192.2 175 61.7
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 6.0e-47 191.4 175 60.6
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 6.0e-47 191.4 175 62.9
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 1.0e-46 190.7 175 61.7
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.0e-46 190.7 176 62.5
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 2.3e-46 189.5 176 62.5
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 3.0e-46 189.1 180 58.9
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 5.0e-46 188.3 185 60.5
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 5.0e-46 188.3 185 60.5
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 8.6e-46 187.6 175 60.6
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.5e-45 186.8 175 61.7
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 1.5e-45 186.8 180 59.4
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 5.6e-45 184.9 175 61.1
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 7.3e-45 184.5 175 61.1
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 7.3e-45 184.5 175 60.0
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 9.5e-45 184.1 175 61.7
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 1.2e-44 183.7 175 60.6
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.6e-44 183.3 180 59.4
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 2.8e-44 182.6 176 58.5
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 3.6e-44 182.2 176 61.4
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 4.7e-44 181.8 175 59.4
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 6.2e-44 181.4 175 59.4
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 8.1e-44 181.0 175 60.6
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 1.1e-43 180.6 180 58.3
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 1.8e-43 179.9 175 60.0
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 2.3e-43 179.5 176 57.4
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 3.1e-43 179.1 175 60.6
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 4.0e-43 178.7 180 58.9
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 5.2e-43 178.3 175 59.4
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 8.9e-43 177.6 180 57.8
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 8.9e-43 177.6 175 60.0
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 8.9e-43 177.6 180 57.8
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 8.9e-43 177.6 180 57.8
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 1.2e-42 177.2 176 59.7
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 1.2e-42 177.2 175 58.9
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 1.2e-42 177.2 175 58.3
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 1.2e-42 177.2 175 58.9
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 1.5e-42 176.8 176 60.2
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 1.5e-42 176.8 177 59.3
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 1.5e-42 176.8 180 57.8
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.6e-42 176.0 175 60.0
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 2.6e-42 176.0 175 60.6
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 2.6e-42 176.0 181 56.9
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 3.4e-42 175.6 180 57.2
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 3.4e-42 175.6 204 52.5
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 7.5e-42 174.5 180 59.4
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 1.7e-41 173.3 176 60.8
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 2.2e-41 172.9 176 59.1
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 2.9e-41 172.6 176 58.5
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 2.9e-41 172.6 175 57.1
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 2.9e-41 172.6 176 58.5
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 3.7e-41 172.2 175 55.4
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 6.4e-41 171.4 175 56.0
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 6.4e-41 171.4 180 56.7
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 6.4e-41 171.4 180 57.2
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 6.4e-41 171.4 174 56.3
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 6.4e-41 171.4 209 48.8
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.1e-40 170.6 175 58.3
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 1.1e-40 170.6 180 55.6
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.4e-40 170.2 175 57.1
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 1.9e-40 169.9 176 59.7
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 2.4e-40 169.5 175 56.0
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 2.4e-40 169.5 175 58.3
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 4.1e-40 168.7 175 57.7
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 5.4e-40 168.3 180 52.2
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 7.1e-40 167.9 175 57.7
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 7.1e-40 167.9 175 57.7
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 1.2e-39 167.2 175 57.7
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 1.2e-39 167.2 175 57.7
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 1.6e-39 166.8 176 57.4
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 2.7e-39 166.0 171 57.9
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 6.0e-39 164.9 175 57.1
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 6.0e-39 164.9 175 56.6
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 6.0e-39 164.9 175 54.9
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 6.0e-39 164.9 115 71.3
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 2.3e-38 162.9 175 53.7
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 5.1e-38 161.8 180 55.0
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 1.1e-37 160.6 180 52.2
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 1.1e-37 160.6 180 50.0
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 9.5e-37 157.5 180 48.9
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 2.1e-36 156.4 180 51.7
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 3.1e-35 152.5 171 53.2
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 3.1e-35 152.5 180 48.3
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 5.2e-35 151.8 124 59.7
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 5.8e-34 148.3 170 52.9
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 1.1e-32 144.1 177 48.6
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.1e-31 139.8 84 79.8
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 6.0e-31 138.3 176 48.9
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 8.6e-30 134.4 177 46.9
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 1.1e-29 134.0 124 57.3
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.5e-29 133.7 175 45.7
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 2.4e-27 126.3 117 58.1
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.5e-26 123.6 175 44.0
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 5.6e-21 105.1 180 40.0
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 1.3e-20 104.0 178 38.2
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 4.8e-20 102.1 101 57.4
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 1.4e-19 100.5 72 65.3
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 2.4e-11 73.2 65 61.5
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.0e-11 72.4 87 52.9
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 9.0e-11 71.2 181 30.4
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 6.4e-09 65.1 60 56.7


User provided reference genes

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