Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 4.6e-64 247.7 119 100.0
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 3.9e-55 218.0 119 84.9
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.3e-54 214.5 117 85.5
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 9.6e-54 213.4 115 86.1
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.6e-54 213.4 115 86.1
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.8e-53 211.1 117 83.8
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.8e-53 211.1 115 85.2
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.2e-53 210.7 115 84.3
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 6.2e-53 210.7 117 83.8
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 6.2e-53 210.7 117 84.6
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.1e-53 210.3 117 83.8
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 8.1e-53 210.3 117 84.6
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.1e-52 209.9 117 84.6
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.8e-52 209.1 115 84.3
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.8e-52 209.1 113 85.0
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.4e-52 208.8 115 84.3
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.3e-52 207.6 117 82.9
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 6.9e-52 207.2 117 81.2
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 6.9e-52 207.2 116 82.8
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.2e-51 206.5 117 82.1
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.5e-51 206.1 117 82.1
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.5e-51 206.1 117 82.1
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.5e-51 206.1 117 82.1
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 1.5e-51 206.1 116 81.0
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.0e-51 205.7 115 82.6
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 2.0e-51 205.7 113 84.1
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 82.6
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 82.6
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 82.6
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 82.6
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 3.4e-51 204.9 116 81.0
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 3.4e-51 204.9 114 84.2
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 4.4e-51 204.5 114 84.2
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 5.8e-51 204.1 113 83.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 5.8e-51 204.1 115 82.6
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 5.8e-51 204.1 114 83.3
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 7.6e-51 203.8 119 80.7
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 7.6e-51 203.8 117 80.3
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 9.9e-51 203.4 115 81.7
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 9.9e-51 203.4 115 81.7
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 9.9e-51 203.4 115 81.7
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 9.9e-51 203.4 115 81.7
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.7e-50 202.6 115 81.7
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 2.2e-50 202.2 117 79.5
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 2.2e-50 202.2 116 81.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 2.2e-50 202.2 115 80.9
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 2.9e-50 201.8 115 81.7
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 6.4e-50 200.7 115 80.0
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 6.4e-50 200.7 115 80.0
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 6.4e-50 200.7 115 80.0
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 6.4e-50 200.7 115 80.0
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 6.4e-50 200.7 115 80.0
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 6.4e-50 200.7 116 80.2
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 8.4e-50 200.3 118 78.8
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 8.4e-50 200.3 114 81.6
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.1e-49 199.9 116 80.2
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.1e-49 199.9 114 83.3
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.1e-49 199.9 113 82.3
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 1.4e-49 199.5 116 80.2
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.9e-49 199.1 113 81.4
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.9e-49 199.1 117 79.5
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 2.4e-49 198.7 116 79.3
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 2.4e-49 198.7 117 77.8
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 2.4e-49 198.7 117 77.8
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 3.2e-49 198.4 117 79.5
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 3.2e-49 198.4 116 79.3
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 4.2e-49 198.0 115 80.9
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 4.2e-49 198.0 115 80.0
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 5.4e-49 197.6 116 79.3
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 7.1e-49 197.2 116 79.3
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 9.3e-49 196.8 116 79.3
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 2.7e-48 195.3 114 78.9
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.7e-48 195.3 117 77.8
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.7e-48 195.3 114 78.1
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 4.6e-48 194.5 116 80.2
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 6.0e-48 194.1 111 81.1
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.0e-47 193.4 110 80.9
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.0e-47 193.4 115 77.4
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.0e-47 193.4 114 78.9
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 1.3e-47 193.0 113 78.8
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.3e-47 193.0 117 75.2
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.3e-47 193.0 110 80.0
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 1.3e-47 193.0 113 77.9
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 1.7e-47 192.6 115 74.8
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 2.3e-47 192.2 117 77.8
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 2.3e-47 192.2 114 78.1
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.3e-47 192.2 114 78.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.0e-47 191.8 113 78.8
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.0e-47 191.8 113 78.8
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.9e-47 191.4 114 77.2
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 5.1e-47 191.0 116 75.9
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.6e-47 190.7 113 75.2
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.6e-47 190.7 113 75.2
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 2.5e-46 188.7 113 77.0
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 4.3e-46 188.0 114 74.6
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 4.3e-46 188.0 114 74.6
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.6e-46 187.6 119 74.8
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 5.6e-46 187.6 117 78.6
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.3e-45 186.4 113 71.7
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 2.1e-45 185.7 150 62.7
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 3.6e-45 184.9 114 72.8
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 4.8e-45 184.5 116 72.4
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.8e-44 182.6 136 64.7
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 5.3e-44 181.0 114 71.1
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 9.0e-44 180.3 115 68.7
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 9.0e-44 180.3 109 76.1
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 2.6e-43 178.7 101 80.2
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 2.9e-42 175.3 107 72.0
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.8e-42 174.9 115 69.6
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.9e-42 174.5 115 69.6
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 8.4e-42 173.7 104 75.0
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.4e-41 172.2 103 78.6
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 2.1e-40 169.1 105 77.1
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 2.7e-40 168.7 181 51.4
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 3.5e-40 168.3 102 74.5
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-39 166.4 104 74.0
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 2.3e-39 165.6 103 73.8
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 3.0e-39 165.2 98 78.6
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 3.9e-39 164.9 122 66.4
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.5e-38 162.9 90 85.6
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.3e-34 149.8 114 64.0
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 3.5e-32 141.7 113 54.9
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 6.0e-32 141.0 112 57.1
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.8e-31 139.4 115 60.9
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 5.1e-31 137.9 117 59.8
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.8e-29 132.1 112 52.7
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 6.9e-28 127.5 84 70.2
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 5.0e-26 121.3 109 49.5
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 4.6e-24 114.8 59 84.7
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-23 111.3 111 45.9
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 9.7e-22 107.1 99 50.5
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.1e-20 103.6 95 51.6
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.4e-20 102.4 84 63.1
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 4.1e-20 101.7 56 75.0
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.5e-19 99.8 59 74.6
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 3.4e-19 98.6 57 70.2
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 4.5e-19 98.2 57 86.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 7.7e-19 97.4 105 47.6
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 6.5e-18 94.4 56 82.1
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 1.4e-17 93.2 113 45.1
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 9.4e-17 90.5 59 81.4
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 9.4e-17 90.5 96 44.8
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.2e-16 90.1 150 36.7
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 5.7e-14 81.3 55 67.3
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 1.7e-13 79.7 60 70.0
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 3.1e-12 75.5 46 71.7
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 6.5e-10 67.8 99 36.4
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 4.4e-06 55.1 82 46.3


User provided reference genes

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