Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3139 Acer truncatum HOM05D000120 ORTHO05D009410 9.8e-130 466.8 242 100.0
Ciclev10029808m.g Citrus clementina HOM05D000120 ORTHO05D009410 7.9e-39 164.9 234 47.4
Thecc.02G075700 Theobroma cacao HOM05D000120 ORTHO05D009410 8.8e-38 161.4 232 44.0
Dinv23458 Davidia involucrata HOM05D000120 ORTHO05D009410 2.8e-36 156.4 226 43.4
Duzib248G0587 Durio zibethinus HOM05D000120 ORTHO05D009410 3.7e-36 156.0 231 42.9
RcHm_v2.0_Chr6g0267851 Rosa chinensis HOM05D000120 ORTHO05D009410 8.2e-36 154.8 242 40.5
COL.COLO4_26040 Corchorus olitorius HOM05D000120 ORTHO05D009410 4.1e-35 152.5 234 42.7
TWI79G0897 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 5.3e-35 152.1 226 42.5
Cfa005100 Carpinus fangiana HOM05D000722 ORTHO05D000590 1.6e-34 150.6 240 39.6
TWI31G0702 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 4.5e-34 149.1 226 41.2
Duzib132G0615 Durio zibethinus HOM05D000120 ORTHO05D009410 2.9e-33 146.4 230 40.4
FAN20G2164 Fragaria x ananassa HOM05D000120 ORTHO05D009410 2.5e-32 143.3 229 40.6
FvH4_2g10380 Fragaria vesca HOM05D000120 ORTHO05D009410 4.2e-32 142.5 229 40.6
MD10G1063700 Malus domestica HOM05D000120 ORTHO05D009410 4.2e-32 142.5 255 39.6
Haze_02260 Corylus avellana HOM05D000120 ORTHO05D009410 5.5e-32 142.1 239 38.9
FAN24G2037 Fragaria x ananassa HOM05D000120 ORTHO05D009410 2.1e-31 140.2 229 40.2
MD00G1040100 Malus domestica HOM05D000120 ORTHO05D009410 4.0e-30 136.0 231 40.7
Actinidia02243 Actinidia chinensis HOM05D000120 ORTHO05D009410 3.3e-29 132.9 226 38.9
FAN27G2529 Fragaria x ananassa HOM05D000120 ORTHO05D009410 2.2e-28 130.2 180 42.8
GSVIVG01024178001 Vitis vinifera HOM05D000120 ORTHO05D009410 2.2e-28 130.2 231 39.4
Cpa.g.sc150.20 Carica papaya HOM05D000120 ORTHO05D009410 1.4e-27 127.5 246 37.0
Potri.009G124000 Populus trichocarpa HOM05D000120 ORTHO05D009410 3.1e-27 126.3 227 37.4
Lalb_Chr03g0030591 Lupinus albus HOM05D000120 ORTHO05D009410 4.1e-27 125.9 225 36.0
Manes.04G083900 Manihot esculenta HOM05D000120 ORTHO05D009410 7.0e-27 125.2 235 37.0
Gohir.D12G031200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 3.5e-26 122.9 197 37.6
Gorai.008G031900 Gossypium raimondii HOM05D000120 ORTHO05D009410 3.5e-26 122.9 197 37.6
Sabra09G0095200 Salix brachista HOM05D000120 ORTHO05D009410 4.5e-26 122.5 227 36.6
PGR042G1442 Punica granatum HOM05D000120 ORTHO05D009410 7.7e-26 121.7 236 37.3
Gohir.A12G041200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 1.3e-25 120.9 172 40.1
Prupe.8G085200 Prunus persica HOM05D000120 ORTHO05D009410 2.9e-25 119.8 235 37.9
Manes.11G082300 Manihot esculenta HOM05D000120 ORTHO05D009410 3.8e-25 119.4 228 36.8
vmacro02052 Vaccinium macrocarpon HOM05D000120 ORTHO05D009410 5.0e-25 119.0 236 37.7
CiPaw.06G128400 Carya illinoinensis HOM05D000120 ORTHO05D009410 1.1e-24 117.9 242 35.5
Lj3g0001494 Lotus japonicus HOM05D000120 ORTHO05D009410 2.5e-24 116.7 228 36.0
QL11p046369 Quercus lobata HOM05D000120 ORTHO05D009410 5.5e-24 115.5 357 29.7
Ca_27169_v3 Cicer arietinum L. HOM05D000120 ORTHO05D009410 2.7e-23 113.2 226 34.1
Glyma.06G246300 Glycine max HOM05D000120 ORTHO05D009410 8.0e-23 111.7 258 34.5
arahy.Tifrunner.gnm1.ann1.X3J0BR Arachis hypogaea HOM05D000120 ORTHO05D009410 1.4e-22 110.9 229 35.4
VMungo1127G0720 Vigna mungo HOM05D000120 ORTHO05D009410 1.8e-22 110.5 220 34.1
Duzib052G0028 Durio zibethinus HOM05D000120 ORTHO05D009410 2.3e-22 110.2 226 35.8
TAR376G0786 Trochodendron aralioides HOM05D000120 ORTHO05D009410 2.3e-22 110.2 237 36.3
Phvul.011G156600 Phaseolus vulgaris HOM05D000120 ORTHO05D009410 1.2e-21 107.8 232 36.6
CANSAT11G1664 Cannabis sativa HOM05D000120 ORTHO05D009410 1.5e-21 107.5 249 30.5
TAR628G1238 Trochodendron aralioides HOM05D000120 ORTHO05D009410 3.7e-20 102.8 244 34.0
MSTRG.5421 Avicennia marina HOM05D000120 ORTHO05D009410 4.8e-20 102.4 226 33.6
Peaxi162Scf00016g10015 Petunia axillaris HOM05D000120 ORTHO05D009410 1.4e-19 100.9 235 35.3
Hma1.2p1_1244F.1_g270010 Hydrangea macrophylla HOM05D000120 ORTHO05D009410 1.8e-19 100.5 259 35.1
TPR.G31517 Trifolium pratense HOM05D000120 ORTHO05D009410 3.1e-19 99.8 245 32.7
Eucgr.G01727 Eucalyptus grandis HOM05D000120 ORTHO05D009410 4.1e-19 99.4 223 35.9
Sopen01g052500 Solanum pennellii HOM05D000120 ORTHO05D009410 5.4e-19 99.0 198 37.9
Potri.004G162300 Populus trichocarpa HOM05D000120 ORTHO05D009410 9.1e-19 98.2 225 34.2
Lsat_1_v5_gn_3_44160 Lactuca sativa HOM05D000120 ORTHO05D009410 2.7e-18 96.7 247 35.6
Oeu055633.1 Olea europaea HOM05D000120 ORTHO05D009410 4.5e-18 95.9 241 29.9
Solyc01g110350.2 Solanum lycopersicum HOM05D000120 ORTHO05D009410 7.7e-18 95.1 198 38.4
HanXRQChr15g0478301 Helianthus annuus HOM05D000120 ORTHO05D009410 1.3e-17 94.4 230 36.5
AUR62010396 Chenopodium quinoa HOM05D000120 ORTHO05D009410 1.7e-17 94.0 233 33.5
Sc08g0000840 Simmondsia chinensis HOM05D000120 ORTHO05D009410 1.7e-17 94.0 234 31.6
CsaV3_7G000360 Cucumis sativus L. HOM05D000120 ORTHO05D009410 2.2e-17 93.6 245 30.6
Sed0018675 Sechium edule HOM05D000120 ORTHO05D009410 2.2e-17 93.6 292 27.7
PGSC0003DMG400046163 Solanum tuberosum HOM05D000120 ORTHO05D009410 4.2e-16 89.4 244 34.4
MELO3C002789.2 Cucumis melo HOM05D000120 ORTHO05D009410 5.5e-16 89.0 248 30.2
Sed0016080 Sechium edule HOM05D000120 ORTHO05D009410 5.5e-16 89.0 279 29.4
Nn7g36692 Nelumbo nucifera HOM05D000120 ORTHO05D009410 7.2e-16 88.6 265 31.3
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 2.1e-15 87.0 230 31.3
Hund00217 Selenicereus undatus HOM05D000120 ORTHO05D000105 2.1e-15 87.0 226 28.8
CAN.G170.96 Capsicum annuum HOM05D000120 ORTHO05D009410 4.7e-15 85.9 235 32.3
ClCG02G004590 Citrullus lanatus HOM05D000120 ORTHO05D009410 4.7e-15 85.9 240 29.6
Nitab4.5_0017990g0010 Nicotiana tabacum HOM05D000120 ORTHO05D009410 5.2e-14 82.4 239 32.6
unitig_747.g21207 Utricularia gibba HOM05D000120 ORTHO05D009410 1.2e-13 81.3 226 33.6
DCAR_022914 Daucus carota HOM05D000120 ORTHO05D009410 3.4e-13 79.7 244 29.9
PSO210G7327 Papaver somniferum HOM05D000120 ORTHO05D009410 1.3e-12 77.8 245 30.2
ECA240G4650 Erigeron canadensis HOM05D000120 ORTHO05D009410 3.7e-12 76.3 231 32.9
Migut.B00178 Erythranthe guttata HOM05D000120 ORTHO05D009410 4.9e-12 75.9 237 33.8
Aqoxy5G01485 Aquilegia oxysepala HOM05D000120 ORTHO05D009410 2.4e-11 73.6 236 29.2
Aa31LG6G16270 Aethionema arabicum HOM05D011065 ORTHO05D009410 9.2e-11 71.6 235 26.8
Glyma.12G151000 Glycine max HOM05D000120 ORTHO05D009410 3.8e-09 66.2 45 62.2
Psat4g137840 Pisum sativum HOM05D000120 ORTHO05D009410 5.0e-09 65.9 176 29.0
Cc02_g16960 Coffea canephora HOM05D000120 ORTHO05D009410 8.6e-09 65.1 225 29.3
Sp7g36860 Schrenkiella parvula HOM05D011065 ORTHO05D009410 2.5e-08 63.5 265 25.7
AL7G10880 Arabidopsis lyrata HOM05D011065 ORTHO05D009410 4.3e-08 62.8 268 25.0
Thhalv10027283m.g Eutrema salsugineum HOM05D011065 ORTHO05D009410 5.6e-08 62.4 278 26.3
SalBow6G2916 Salvia bowleyana HOM05D000120 ORTHO05D009410 7.3e-08 62.0 284 25.4
AT4G38980 Arabidopsis thaliana HOM05D011065 ORTHO05D009410 1.2e-07 61.2 268 25.4
Carub.0007s0080 Capsella rubella HOM05D011065 ORTHO05D009410 6.1e-07 58.9 264 28.0
FAN15G0678 Fragaria x ananassa HOM05D000722 ORTHO05D000590 6.1e-07 58.9 140 34.3
Os02g0469000 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D009410 6.1e-07 58.9 221 25.3
BcaB03g12236 Brassica carinata HOM05D011065 ORTHO05D009410 1.0e-06 58.2 262 26.3
BcaC01g00270 Brassica carinata HOM05D011065 ORTHO05D009410 2.3e-06 57.0 259 25.1
C03p77470 Brassica napus HOM05D011065 ORTHO05D009410 2.3e-06 57.0 259 25.1
BolC3t20002H Brassica oleracea HOM05D011065 ORTHO05D009410 2.3e-06 57.0 259 25.1
PSO170G1560 Papaver somniferum HOM05D000120 ORTHO05D009410 8.9e-06 55.1 104 35.6


User provided reference genes

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