Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2961 Acer truncatum HOM05D005080 ORTHO05D002680 9.3e-43 176.8 112 100.0
GSVIVG01031233001 Vitis vinifera HOM05D005080 ORTHO05D002680 6.7e-17 90.9 141 53.9
Ciclev10002575m.g Citrus clementina HOM05D005080 ORTHO05D002680 7.5e-16 87.4 144 52.8
COL.COLO4_04158 Corchorus olitorius HOM05D005080 ORTHO05D002680 7.5e-16 87.4 141 54.6
Cfa006699 Carpinus fangiana HOM05D005080 ORTHO05D002680 1.3e-15 86.7 141 51.8
Haze_04068 Corylus avellana HOM05D005080 ORTHO05D002680 1.3e-15 86.7 141 51.8
Manes.08G111700 Manihot esculenta HOM05D005080 ORTHO05D002680 1.3e-15 86.7 141 51.1
Actinidia35525 Actinidia chinensis HOM05D005080 ORTHO05D002680 2.2e-15 85.9 141 56.7
CSS0004193 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 2.2e-15 85.9 141 44.7
CSS0006739 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 2.2e-15 85.9 141 44.7
CiPaw.07G029300 Carya illinoinensis HOM05D005080 ORTHO05D002680 4.8e-15 84.7 135 43.7
QL03p040025 Quercus lobata HOM05D005080 ORTHO05D002680 1.8e-14 82.8 135 43.7
Cc02_g34980 Coffea canephora HOM05D005080 ORTHO05D002680 2.4e-14 82.4 141 42.6
TWI56G0821 Tripterygium wilfordii HOM05D005080 ORTHO05D002680 5.3e-14 81.3 140 44.3
TPR.G25211 Trifolium pratense HOM05D005080 ORTHO05D002680 9.1e-14 80.5 142 47.9
CANSAT80G1801 Cannabis sativa HOM05D005080 ORTHO05D002680 1.6e-13 79.7 43 93.0
Duzib177G0226 Durio zibethinus HOM05D005080 ORTHO05D002680 1.6e-13 79.7 43 93.0
vmacro01559 Vaccinium macrocarpon HOM05D005080 ORTHO05D002680 1.6e-13 79.7 43 93.0
THA.LOC104816888 Tarenaya hassleriana HOM05D005080 ORTHO05D002680 2.0e-13 79.3 43 93.0
unitig_0.g2584 Utricularia gibba HOM05D005080 ORTHO05D002680 2.0e-13 79.3 52 82.7
Rhsim11G0094800 Rhododendron simsii HOM05D005080 ORTHO05D002680 2.7e-13 79.0 142 41.5
VMungo0720G3125 Vigna mungo HOM05D005080 ORTHO05D002680 2.7e-13 79.0 137 54.0
ClCG02G014980 Citrullus lanatus HOM05D005080 ORTHO05D002680 4.5e-13 78.2 43 90.7
MELO3C004191.2 Cucumis melo HOM05D005080 ORTHO05D002680 4.5e-13 78.2 43 90.7
CsaV3_2G007020 Cucumis sativus L. HOM05D005080 ORTHO05D002680 4.5e-13 78.2 43 90.7
Phvul.007G201000 Phaseolus vulgaris HOM05D005080 ORTHO05D002680 4.5e-13 78.2 142 52.1
Sed0010078 Sechium edule HOM05D005080 ORTHO05D002680 4.5e-13 78.2 43 90.7
Thecc.05G322200 Theobroma cacao HOM05D005080 ORTHO05D002680 4.5e-13 78.2 141 53.9
Eucgr.H03287 Eucalyptus grandis HOM05D005080 ORTHO05D002680 5.9e-13 77.8 43 90.7
Glyma.10G147400 Glycine max HOM05D005080 ORTHO05D002680 5.9e-13 77.8 142 50.7
TPR.G34915 Trifolium pratense HOM05D005080 ORTHO05D002680 5.9e-13 77.8 142 50.0
Cpa.g.sc48.156 Carica papaya HOM05D005080 ORTHO05D002680 1.3e-12 76.6 140 47.1
Duzib106G0715 Durio zibethinus HOM05D005080 ORTHO05D002680 1.3e-12 76.6 43 88.4
Gohir.A11G273000 Gossypium hirsutum HOM05D005080 ORTHO05D002680 1.3e-12 76.6 43 90.7
Gohir.D11G283200 Gossypium hirsutum HOM05D005080 ORTHO05D002680 1.3e-12 76.6 43 90.7
Gorai.007G306000 Gossypium raimondii HOM05D005080 ORTHO05D002680 1.3e-12 76.6 43 90.7
Lalb_Chr02g0147831 Lupinus albus HOM05D005080 ORTHO05D002680 1.3e-12 76.6 142 45.1
MD04G1193400 Malus domestica HOM05D005080 ORTHO05D002680 1.3e-12 76.6 43 90.7
Potri.013G009100 Populus trichocarpa HOM05D005080 ORTHO05D002680 1.3e-12 76.6 43 88.4
AL1G66100 Arabidopsis lyrata HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
AT1G56420 Arabidopsis thaliana HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
BcaB04g20161 Brassica carinata HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
BcaC09g49559 Brassica carinata HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
A01p27440 Brassica napus HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
C01p35300 Brassica napus HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
BolC1t03487H Brassica oleracea HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
BraA01t02883Z Brassica rapa HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
Carub.0002s0773 Capsella rubella HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
CARHR055230 Cardamine hirsuta HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
Ca_10168_v3 Cicer arietinum L. HOM05D005080 ORTHO05D002680 1.7e-12 76.3 142 52.1
Dinv30882 Davidia involucrata HOM05D005080 ORTHO05D002680 1.7e-12 76.3 145 53.1
Lsat_1_v5_gn_5_103961 Lactuca sativa HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
Medtr1g084000 Medicago truncatula HOM05D005080 ORTHO05D002680 1.7e-12 76.3 142 48.6
QL06p011711 Quercus lobata HOM05D005080 ORTHO05D002680 1.7e-12 76.3 120 42.5
Sp2g06450 Schrenkiella parvula HOM05D005080 ORTHO05D002680 1.7e-12 76.3 43 88.4
Duzib128G1506 Durio zibethinus HOM05D005080 ORTHO05D002680 2.2e-12 75.9 43 90.7
Lj5g0010805 Lotus japonicus HOM05D005080 ORTHO05D002680 2.2e-12 75.9 137 50.4
SGA_v2.0_scaffold18G08397 Striga asiatica HOM05D005080 ORTHO05D002680 2.2e-12 75.9 43 88.4
Gohir.D11G283100 Gossypium hirsutum HOM05D005080 ORTHO05D002680 2.9e-12 75.5 43 88.4
Gorai.007G305900 Gossypium raimondii HOM05D005080 ORTHO05D002680 2.9e-12 75.5 43 88.4
TWI36G1328 Tripterygium wilfordii HOM05D005080 ORTHO05D002680 2.9e-12 75.5 43 88.4
ECA234G0011 Erigeron canadensis HOM05D005080 ORTHO05D002680 3.8e-12 75.1 43 86.0
Thhalv10023712m.g Eutrema salsugineum HOM05D005080 ORTHO05D002680 3.8e-12 75.1 43 86.0
HanXRQChr10g0294491 Helianthus annuus HOM05D005080 ORTHO05D002680 3.8e-12 75.1 43 86.0
Glyma.20G098100 Glycine max HOM05D005080 ORTHO05D002680 5.0e-12 74.7 43 88.4
Lalb_Chr06g0167471 Lupinus albus HOM05D005080 ORTHO05D002680 5.0e-12 74.7 43 88.4
Psat6g152200 Pisum sativum HOM05D005080 ORTHO05D002680 5.0e-12 74.7 43 88.4
Sabra13G0007700 Salix brachista HOM05D005080 ORTHO05D002680 5.0e-12 74.7 44 86.4
Aqoxy2G02773 Aquilegia oxysepala HOM05D005080 ORTHO05D002680 6.5e-12 74.3 135 40.0
MSTRG.3863 Avicennia marina HOM05D005080 ORTHO05D002680 6.5e-12 74.3 43 86.0
Prupe.6G313500 Prunus persica HOM05D005080 ORTHO05D002680 6.5e-12 74.3 43 88.4
Aa31LG1G5960 Aethionema arabicum HOM05D005080 ORTHO05D002680 8.5e-12 73.9 43 86.0
arahy.Tifrunner.gnm1.ann1.6BZ3LL Arachis hypogaea HOM05D005080 ORTHO05D002680 8.5e-12 73.9 142 50.7
arahy.Tifrunner.gnm1.ann1.DD48CX Arachis hypogaea HOM05D005080 ORTHO05D002680 8.5e-12 73.9 142 50.7
CSS0032564 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 8.5e-12 73.9 39 94.9
CAN.G625.12 Capsicum annuum HOM05D005080 ORTHO05D002680 8.5e-12 73.9 43 86.0
Dinv24438 Davidia involucrata HOM05D005080 ORTHO05D002680 8.5e-12 73.9 141 51.1
Lju926A9G32 Lonicera japonica HOM05D005080 ORTHO05D002680 8.5e-12 73.9 43 83.7
Nitab4.5_0000155g0030 Nicotiana tabacum HOM05D005080 ORTHO05D002680 8.5e-12 73.9 43 86.0
Nitab4.5_0003894g0020 Nicotiana tabacum HOM05D005080 ORTHO05D002680 8.5e-12 73.9 43 86.0
Peaxi162Scf01208g00140 Petunia axillaris HOM05D005080 ORTHO05D002680 8.5e-12 73.9 43 86.0
PGSC0003DMG400012652 Solanum tuberosum HOM05D005080 ORTHO05D002680 8.5e-12 73.9 43 86.0
FvH4_6g07400 Fragaria vesca HOM05D005080 ORTHO05D002680 1.1e-11 73.6 43 86.0
FAN02G4361 Fragaria x ananassa HOM05D005080 ORTHO05D002680 1.1e-11 73.6 43 86.0
FAN05G0620 Fragaria x ananassa HOM05D005080 ORTHO05D002680 1.1e-11 73.6 43 86.0
FAN09G1903 Fragaria x ananassa HOM05D005080 ORTHO05D002680 1.1e-11 73.6 43 86.0
FAN14G1760 Fragaria x ananassa HOM05D005080 ORTHO05D002680 1.1e-11 73.6 43 86.0
RcHm_v2.0_Chr3g0457001 Rosa chinensis HOM05D005080 ORTHO05D002680 1.1e-11 73.6 43 86.0
Sc25g0003340 Simmondsia chinensis HOM05D005080 ORTHO05D002680 1.1e-11 73.6 43 86.0
Migut.G00046 Erythranthe guttata HOM05D005080 ORTHO05D002680 1.5e-11 73.2 43 83.7
Solyc02g085920.3 Solanum lycopersicum HOM05D005080 ORTHO05D002680 1.9e-11 72.8 43 83.7
AUR62016127 Chenopodium quinoa HOM05D005080 ORTHO05D002680 2.5e-11 72.4 43 83.7
Hma1.2p1_0008F-1.1_g005640 Hydrangea macrophylla HOM05D005080 ORTHO05D002680 3.2e-11 72.0 141 51.1
Sopen02g030590 Solanum pennellii HOM05D005080 ORTHO05D002680 3.2e-11 72.0 39 89.7
ATR0706G213 Amborella trichopoda HOM05D005080 ORTHO05D002680 4.2e-11 71.6 43 81.4
CDE11G1091 Ceratophyllum demersum HOM05D005080 ORTHO05D002680 4.2e-11 71.6 43 83.7
Aqoxy2G03866 Aquilegia oxysepala HOM05D005080 ORTHO05D002680 5.5e-11 71.2 43 83.7
EL10Ac3g05465 Beta vulgaris HOM05D005080 ORTHO05D002680 5.5e-11 71.2 43 81.4
C02p30770 Brassica napus HOM05D004697 ORTHO05D006015 5.5e-11 71.2 39 89.7
MBI19_g07241_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 5.5e-11 71.2 43 81.4
MBI19_g09323_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 5.5e-11 71.2 43 81.4
Hund11962 Selenicereus undatus HOM05D005080 ORTHO05D002680 5.5e-11 71.2 43 83.7
TAR362G1134 Trochodendron aralioides HOM05D005080 ORTHO05D002680 5.5e-11 71.2 43 83.7
BolC3t14325H Brassica oleracea HOM05D004697 ORTHO05D002680 9.4e-11 70.5 41 85.4
BcaC05g29157 Brassica carinata HOM05D004697 ORTHO05D002680 1.6e-10 69.7 39 87.2
BolC5t34080H Brassica oleracea HOM05D004697 ORTHO05D002680 1.6e-10 69.7 39 87.2
PSO210G1547 Papaver somniferum HOM05D005080 ORTHO05D002680 1.6e-10 69.7 43 81.4
PSO761G0685 Papaver somniferum HOM05D005080 ORTHO05D002680 1.6e-10 69.7 43 81.4
SalBow8G1371 Salvia bowleyana HOM05D005080 ORTHO05D002680 2.1e-10 69.3 39 87.2
HPP92_019389 Vanilla planifolia HOM05D005080 ORTHO05D002680 2.7e-10 68.9 43 81.4
CDE05G2119 Ceratophyllum demersum HOM05D005080 ORTHO05D002680 3.6e-10 68.6 43 81.4
TAR365G0655 Trochodendron aralioides HOM05D005080 ORTHO05D002680 3.6e-10 68.6 39 87.2
SalBow6G6408 Salvia bowleyana HOM05D005080 ORTHO05D002680 4.7e-10 68.2 39 84.6
SalBow8G3275 Salvia bowleyana HOM05D005080 ORTHO05D002680 4.7e-10 68.2 39 84.6
C05p54140 Brassica napus HOM05D004697 ORTHO05D002680 8.0e-10 67.4 39 84.6
MBI18_g35139_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 8.0e-10 67.4 55 65.5
Zm00001eb137010 Zea mays HOM05D005080 ORTHO05D002680 1.0e-09 67.0 43 74.4
Gorai.008G059700 Gossypium raimondii HOM05D005080 ORTHO05D002680 1.4e-09 66.6 35 97.1
Os12g0560600 Oryza sativa ssp. japonica HOM05D005080 ORTHO05D002680 1.8e-09 66.2 43 72.1
PGR083G2900 Punica granatum HOM05D005080 ORTHO05D002680 1.8e-09 66.2 43 76.7
PSO170G3135 Papaver somniferum HOM05D005080 ORTHO05D002680 2.3e-09 65.9 43 74.4
C04p27090 Brassica napus HOM05D005080 ORTHO05D002680 3.0e-09 65.5 40 77.5
BolC4t24079H Brassica oleracea HOM05D005080 ORTHO05D002680 3.0e-09 65.5 40 77.5
Gohir.D10G107500 Gossypium hirsutum HOM05D005080 ORTHO05D002680 4.0e-09 65.1 35 94.3
QL03p013481 Quercus lobata HOM05D005080 ORTHO05D002680 4.0e-09 65.1 126 39.7
Ah.04g154660 Amaranthus hybridus HOM05D005080 ORTHO05D002680 5.2e-09 64.7 38 84.2
PSO357G0168 Papaver somniferum HOM05D005080 ORTHO05D002680 8.8e-09 63.9 43 72.1
Gohir.D12G056701 Gossypium hirsutum HOM05D005080 ORTHO05D002680 2.6e-08 62.4 34 94.1
Oeu019968.1 Olea europaea HOM05D005080 ORTHO05D002680 3.4e-08 62.0 34 88.2
Oeu032023.1 Olea europaea HOM05D005080 ORTHO05D002680 5.7e-08 61.2 34 85.3
Gohir.A11G272900 Gossypium hirsutum HOM05D005080 ORTHO05D002680 4.8e-07 58.2 34 85.3
Pp3c5_5210 Physcomitrium patens HOM05D005080 ORTHO05D002680 1.4e-06 56.6 43 60.5
SEGI_39060 Sequoiadendron giganteum HOM05D005080 ORTHO05D002680 1.4e-06 56.6 43 65.1
DCAR_025280 Daucus carota HOM05D005080 ORTHO05D002680 3.1e-06 55.5 43 72.1


User provided reference genes

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