Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 2.9e-104 383.6 208 100.0
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 7.2e-79 299.3 208 74.0
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 1.0e-61 242.3 212 59.0
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 2.4e-58 231.1 205 59.0
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 1.1e-55 222.2 209 56.0
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 3.7e-51 207.2 209 54.1
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.1e-50 205.7 206 51.9
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 1.1e-50 205.7 209 52.2
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 3.1e-50 204.1 204 54.9
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 3.1e-50 204.1 221 52.5
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 7.0e-50 203.0 205 54.1
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 9.1e-50 202.6 213 51.2
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 3.5e-49 200.7 205 53.2
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 5.9e-49 199.9 147 65.3
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.3e-48 198.7 206 51.0
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 1.7e-48 198.4 216 51.4
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 2.3e-45 188.0 147 60.5
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 2.3e-45 188.0 208 49.5
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 1.3e-43 182.2 147 59.2
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 4.8e-43 180.3 147 57.1
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 6.3e-43 179.9 210 45.7
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 1.1e-42 179.1 203 44.3
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 1.6e-41 175.3 147 57.1
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 2.7e-41 174.5 211 45.5
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 1.3e-40 172.2 147 53.7
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 2.3e-40 171.4 181 49.7
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 3.8e-40 170.6 146 56.8
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 3.8e-40 170.6 146 56.8
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 6.6e-40 169.9 147 55.8
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 6.6e-40 169.9 207 44.9
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 6.6e-40 169.9 205 46.3
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 1.1e-39 169.1 147 55.1
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 1.5e-39 168.7 149 55.7
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.5e-39 168.7 207 44.4
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.5e-39 168.7 207 44.4
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 1.9e-39 168.3 180 48.9
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 2.5e-39 167.9 148 55.4
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 1.2e-38 165.6 205 47.8
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 1.6e-38 165.2 145 54.5
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 2.8e-38 164.5 210 44.3
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 8.0e-38 162.9 148 54.1
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 1.4e-37 162.2 209 44.0
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 1.4e-37 162.2 209 44.0
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 1.5e-36 158.7 147 49.7
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 1.5e-36 158.7 202 42.6
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 2.6e-36 157.9 176 44.9
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 3.4e-36 157.5 147 49.7
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 9.8e-36 156.0 148 49.3
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 9.8e-36 156.0 147 52.4
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 6.3e-35 153.3 121 60.3
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 3.1e-34 151.0 205 42.9
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 7.0e-34 149.8 148 47.3
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 1.2e-33 149.1 183 42.1
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 1.6e-33 148.7 172 52.9
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 2.0e-33 148.3 188 43.1
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 4.5e-33 147.1 148 44.6
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 4.5e-33 147.1 198 40.4
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 1.3e-32 145.6 201 40.8
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 1.7e-32 145.2 200 41.5
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 1.7e-32 145.2 200 41.5
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 3.8e-32 144.1 147 47.6
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 2.5e-31 141.4 151 45.0
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 2.5e-31 141.4 149 46.3
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 3.3e-31 141.0 147 45.6
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 4.3e-31 140.6 148 47.3
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 7.3e-31 139.8 147 44.9
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 2.1e-30 138.3 147 45.6
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 6.1e-30 136.7 147 45.6
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 8.0e-30 136.3 147 46.9
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.3e-29 134.8 147 45.6
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 3.0e-29 134.4 146 50.0
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 6.8e-29 133.3 181 40.3
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.5e-28 132.1 149 44.3
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 2.0e-28 131.7 210 36.2
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 2.0e-28 131.7 147 44.9
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 7.5e-28 129.8 147 44.9
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 9.8e-28 129.4 147 46.3
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 1.3e-27 129.0 148 43.2
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 2.2e-27 128.3 147 45.6
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 2.9e-27 127.9 146 43.8
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.1e-26 125.9 152 41.4
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 1.2e-25 122.5 204 36.8
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 4.6e-25 120.6 208 38.5
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 6.6e-24 116.7 207 35.7
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 4.7e-22 110.5 204 38.2
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 9.8e-20 102.8 147 38.1
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 2.9e-19 101.3 148 35.1
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 5.4e-18 97.1 133 39.8
Atru.BG.59.p Acer truncatum HOM05D007083 ORTHO05D008801 1.2e-17 95.9 74 73.0
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 4.6e-17 94.0 198 31.3
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 5.6e-15 87.0 146 39.0
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 4.0e-13 80.9 149 32.9
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 1.6e-09 68.9 145 29.7
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 1.6e-09 68.9 145 29.0
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 2.7e-09 68.2 52 51.9
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 1.7e-08 65.5 148 30.4
Ah.10g034380 Amaranthus hybridus HOM05D006931 ORTHO05D008782 5.1e-08 63.9 145 27.6
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 6.6e-08 63.5 145 27.6
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 8.6e-08 63.2 137 28.5
SalBow1G4479 Salvia bowleyana HOM05D006931 ORTHO05D008782 1.1e-07 62.8 148 27.7
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 1.1e-07 62.8 145 26.2
Dinv23568 Davidia involucrata HOM05D007675 ORTHO05D009699 1.9e-07 62.0 210 28.1
Glyma.08G199100 Glycine max HOM05D006931 ORTHO05D008782 1.9e-07 62.0 148 29.7
QL04p060976 Quercus lobata HOM05D006931 ORTHO05D008782 1.9e-07 62.0 148 29.1
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 2.5e-07 61.6 147 27.9
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 2.5e-07 61.6 145 26.9
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 3.3e-07 61.2 145 27.6
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 3.3e-07 61.2 146 30.1
QL04p061072 Quercus lobata HOM05D006931 ORTHO05D008782 4.3e-07 60.8 148 29.1
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 4.3e-07 60.8 47 48.9
Nitab4.5_0001774g0100 Nicotiana tabacum HOM05D006931 ORTHO05D008782 5.6e-07 60.5 145 26.9
Solyc07g047620.3 Solanum lycopersicum HOM05D006931 ORTHO05D008782 5.6e-07 60.5 145 26.9
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 7.3e-07 60.1 145 27.6
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 9.5e-07 59.7 143 28.0
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 9.5e-07 59.7 149 26.2
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 1.6e-06 58.9 145 28.3
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 1.6e-06 58.9 145 27.6
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 2.1e-06 58.5 145 25.5
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 2.1e-06 58.5 145 25.5
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 2.1e-06 58.5 145 28.3
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 2.1e-06 58.5 145 28.3
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 2.8e-06 58.2 145 26.9
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.8e-06 58.2 130 27.7
Sc07g0001940 Simmondsia chinensis HOM05D006931 ORTHO05D008782 2.8e-06 58.2 145 25.5
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 2.8e-06 58.2 145 26.2
AUR62003544 Chenopodium quinoa HOM05D006931 ORTHO05D008782 3.6e-06 57.8 145 26.2
Haze_12642 Corylus avellana HOM05D006931 ORTHO05D008782 4.7e-06 57.4 146 28.1
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 4.7e-06 57.4 145 26.2
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 6.2e-06 57.0 147 25.2
AUR62017857 Chenopodium quinoa HOM05D006931 ORTHO05D008782 6.2e-06 57.0 145 26.2
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 6.2e-06 57.0 145 24.8
MBI01_g10232_MAGBIO Magnolia biondii HOM05D007455 ORTHO05D009431 6.2e-06 57.0 149 26.8
Manes.15G146700 Manihot esculenta HOM05D007675 ORTHO05D009699 6.2e-06 57.0 208 26.4
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 6.2e-06 57.0 145 26.9
RcHm_v2.0_Chr2g0156201 Rosa chinensis HOM05D006931 ORTHO05D008782 8.1e-06 56.6 147 27.9
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 8.1e-06 56.6 146 28.1


User provided reference genes

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