Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 2.1e-21 104.8 52 100.0
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 2.7e-21 104.4 51 100.0
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 3.0e-20 100.9 51 98.0
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 4.4e-19 97.1 47 100.0
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 9.8e-11 69.3 56 64.3
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.3e-10 68.9 53 64.2
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-10 68.6 56 62.5
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.8e-10 67.8 56 62.5
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 4.8e-10 67.0 56 62.5
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 4.8e-10 67.0 52 61.5
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 4.8e-10 67.0 57 56.1
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 8.3e-10 66.2 56 57.1
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 8.3e-10 66.2 56 57.1
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 8.3e-10 66.2 56 57.1
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.8e-09 65.1 56 58.9
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.8e-09 65.1 56 55.4
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.8e-09 65.1 56 60.7
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.4e-09 64.7 52 65.4
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.4e-09 64.7 52 65.4
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 3.1e-09 64.3 55 50.9
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 3.1e-09 64.3 55 61.8
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 3.1e-09 64.3 56 57.1
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 4.1e-09 63.9 51 62.7
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 4.1e-09 63.9 56 57.1
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 5.4e-09 63.5 55 50.9
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 7.0e-09 63.2 50 60.0
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 9.1e-09 62.8 56 55.4
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 1.2e-08 62.4 51 60.8
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.2e-08 62.4 50 58.0
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.6e-08 62.0 56 53.6
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.6e-08 62.0 67 47.8
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 1.6e-08 62.0 49 59.2
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.6e-08 62.0 55 58.2
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 2.7e-08 61.2 51 60.8
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 2.7e-08 61.2 54 53.7
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 2.7e-08 61.2 59 55.9
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 3.5e-08 60.8 53 58.5
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 3.5e-08 60.8 58 53.4
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.5e-08 60.5 54 55.6
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.5e-08 60.5 57 52.6
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 5.9e-08 60.1 56 55.4
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 7.7e-08 59.7 55 47.3
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 7.7e-08 59.7 56 53.6
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 7.7e-08 59.7 56 55.4
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.0e-07 59.3 56 50.0
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.0e-07 59.3 55 47.3
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.0e-07 59.3 58 53.4
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-07 58.9 52 53.8
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.3e-07 58.9 53 58.5
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.3e-07 58.9 56 48.2
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.3e-07 58.9 52 57.7
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.3e-07 58.9 56 51.8
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.7e-07 58.5 53 56.6
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.7e-07 58.5 54 53.7
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 2.2e-07 58.2 52 57.7
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.9e-07 57.8 48 56.2
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.9e-07 57.8 56 55.4
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.9e-07 57.8 56 48.2
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 2.9e-07 57.8 56 48.2
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 2.9e-07 57.8 56 51.8
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 3.8e-07 57.4 54 55.6
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 3.8e-07 57.4 56 48.2
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 3.8e-07 57.4 56 48.2
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.0e-07 57.0 53 56.6
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 5.0e-07 57.0 52 53.8
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 5.0e-07 57.0 52 57.7
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 5.0e-07 57.0 55 49.1
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 6.5e-07 56.6 56 50.0
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 6.5e-07 56.6 54 55.6
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 6.5e-07 56.6 56 51.8
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 6.5e-07 56.6 59 54.2
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 6.5e-07 56.6 56 48.2
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.5e-07 56.6 52 53.8
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 6.5e-07 56.6 52 53.8
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 8.5e-07 56.2 56 48.2
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 8.5e-07 56.2 56 51.8
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 8.5e-07 56.2 52 53.8
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.1e-06 55.8 56 48.2
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.1e-06 55.8 61 45.9
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.1e-06 55.8 53 56.6
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.1e-06 55.8 53 56.6
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.1e-06 55.8 53 52.8
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.1e-06 55.8 56 48.2
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.1e-06 55.8 56 50.0
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.5e-06 55.5 56 48.2
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.5e-06 55.5 54 57.4
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.5e-06 55.5 56 48.2
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.5e-06 55.5 54 51.9
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 2.5e-06 54.7 55 54.5
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 2.5e-06 54.7 55 52.7
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.5e-06 54.7 51 51.0
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 3.2e-06 54.3 52 51.9
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 4.2e-06 53.9 54 50.0
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 4.2e-06 53.9 54 50.0
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 4.2e-06 53.9 56 46.4
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 4.2e-06 53.9 52 46.2
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 5.5e-06 53.5 51 56.9
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 5.5e-06 53.5 48 54.2
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 5.5e-06 53.5 56 46.4
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 7.2e-06 53.1 49 59.2
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 9.5e-06 52.8 56 44.6
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 9.5e-06 52.8 46 52.2


User provided reference genes

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