Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 1.2e-98 363.2 187 100.0
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 2.6e-69 265.8 188 73.4
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 5.0e-65 251.5 207 63.8
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 6.5e-65 251.1 213 61.5
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 6.7e-62 241.1 228 55.7
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 1.1e-61 240.4 198 68.2
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 9.7e-61 237.3 202 61.4
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 2.2e-60 236.1 195 62.1
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 6.3e-60 234.6 198 68.7
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 6.3e-60 234.6 185 69.7
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 8.2e-60 234.2 206 58.7
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 3.1e-59 232.3 201 67.2
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 3.1e-59 232.3 191 60.2
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 5.3e-59 231.5 192 68.2
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 2.0e-58 229.6 184 69.6
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 3.5e-58 228.8 195 66.2
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 3.5e-58 228.8 179 63.1
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 1.3e-57 226.9 173 71.7
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.1e-56 223.8 183 62.3
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 1.1e-56 223.8 186 60.8
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.9e-56 223.0 180 62.8
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.9e-56 223.0 180 62.2
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 1.9e-56 223.0 180 62.2
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.9e-56 223.0 185 64.3
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 5.5e-56 221.5 192 62.0
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 2.1e-55 219.5 187 62.6
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 2.1e-55 219.5 208 58.7
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 6.1e-55 218.0 192 64.1
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 1.4e-54 216.9 205 58.5
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 4.0e-54 215.3 195 63.1
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 3.4e-53 212.2 180 67.2
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 5.7e-53 211.5 193 63.7
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 5.7e-53 211.5 198 60.6
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 7.5e-53 211.1 187 59.9
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 1.3e-52 210.3 192 63.0
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.8e-52 209.1 201 54.7
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 3.7e-52 208.8 181 65.7
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 4.8e-52 208.4 190 63.7
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 1.1e-51 207.2 190 61.6
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 1.4e-51 206.8 187 59.4
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 1.8e-51 206.5 188 60.1
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 2.4e-51 206.1 184 60.9
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 3.1e-51 205.7 178 58.4
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 9.1e-51 204.1 175 61.1
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.2e-50 203.8 174 59.8
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 3.5e-50 202.2 184 56.5
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 1.3e-49 200.3 182 63.2
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 2.9e-49 199.1 189 57.7
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 8.5e-49 197.6 204 54.4
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 3.2e-48 195.7 185 54.6
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 4.2e-48 195.3 188 58.0
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 1.6e-47 193.4 185 59.5
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 2.1e-47 193.0 189 58.7
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 2.7e-47 192.6 207 50.7
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 6.1e-47 191.4 195 56.9
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 1.4e-46 190.3 187 58.3
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 1.8e-46 189.9 114 85.1
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 2.3e-46 189.5 197 53.3
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 3.0e-46 189.1 180 58.3
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 5.2e-46 188.3 204 52.9
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 1.5e-45 186.8 168 58.9
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 2.0e-45 186.4 164 58.5
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 3.4e-45 185.7 196 54.1
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.2e-44 183.0 153 61.4
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 3.7e-44 182.2 172 55.2
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 2.4e-43 179.5 188 56.9
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 3.1e-43 179.1 174 54.0
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 3.1e-43 179.1 174 54.0
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 4.1e-43 178.7 174 54.0
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 1.6e-42 176.8 170 54.1
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.0e-42 176.4 157 59.9
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 3.5e-42 175.6 174 53.4
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.5e-42 175.3 157 59.9
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 4.5e-42 175.3 121 73.6
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.7e-42 174.5 157 59.9
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 1.0e-41 174.1 119 74.8
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 1.7e-41 173.3 172 52.9
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 2.3e-41 172.9 171 52.0
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 2.3e-41 172.9 142 59.9
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 2.3e-41 172.9 142 59.9
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 3.8e-41 172.2 191 49.2
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 6.6e-41 171.4 191 48.7
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 1.5e-40 170.2 157 52.9
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 7.2e-40 167.9 173 51.4
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 7.2e-40 167.9 99 76.8
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 4.7e-39 165.2 163 57.1
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 8.0e-39 164.5 121 62.8
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.5e-37 160.2 133 58.6
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 1.3e-36 157.1 143 57.3
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 1.4e-35 153.7 99 68.7
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 1.4e-35 153.7 111 64.0
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 4.1e-35 152.1 86 75.6
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 7.0e-35 151.4 106 74.5
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 7.0e-35 151.4 206 48.1
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 5.9e-34 148.3 131 57.3
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 2.5e-32 142.9 109 63.3
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 7.3e-32 141.4 128 56.2
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 1.2e-31 140.6 119 52.1
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.1e-31 139.8 143 54.5
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 3.4e-29 132.5 78 75.6
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 4.9e-28 128.6 126 55.6
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 4.1e-27 125.6 156 46.2
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 2.7e-26 122.9 82 63.4
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 3.0e-25 119.4 121 47.1
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.5e-21 107.1 160 42.5
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 5.8e-21 105.1 78 59.0
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.7e-20 103.6 148 43.2
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.7e-20 102.4 135 45.2
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 4.9e-20 102.1 72 80.6
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 1.9e-19 100.1 133 49.6
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 7.1e-19 98.2 103 47.6
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.3e-17 94.0 74 66.2
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 6.2e-15 85.1 112 43.8
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 4.4e-13 79.0 117 41.9
SEGI_30369 Sequoiadendron giganteum HOM05D007022 ORTHO05D014789 5.2e-06 55.5 84 41.7


User provided reference genes

Program Settings