Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 2.3e-91 339.0 182 100.0
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 3.6e-60 235.3 173 75.1
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 1.8e-59 233.0 173 76.9
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 3.0e-59 232.3 173 76.3
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 3.0e-59 232.3 173 76.3
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 5.2e-59 231.5 173 75.1
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 1.2e-58 230.3 176 75.6
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 1.5e-58 229.9 173 75.1
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 4.4e-58 228.4 174 74.7
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 5.7e-58 228.0 173 74.6
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 7.5e-58 227.6 173 75.1
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 9.8e-58 227.3 172 76.2
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 1.3e-57 226.9 173 73.4
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 1.3e-57 226.9 173 74.6
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 1.3e-57 226.9 175 74.3
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 1.7e-57 226.5 173 72.3
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 2.9e-57 225.7 174 73.6
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 4.9e-57 224.9 175 73.1
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 4.9e-57 224.9 173 71.7
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 6.4e-57 224.6 181 70.7
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 1.1e-56 223.8 173 72.3
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.1e-56 223.8 173 72.3
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 3.2e-56 222.2 182 71.4
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 3.2e-56 222.2 173 72.3
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 5.4e-56 221.5 175 72.0
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 5.4e-56 221.5 175 72.0
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 7.0e-56 221.1 173 71.7
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 1.2e-55 220.3 173 71.7
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 1.2e-55 220.3 173 72.3
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 2.7e-55 219.2 173 72.8
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 2.7e-55 219.2 173 71.7
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 4.6e-55 218.4 166 72.3
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 4.6e-55 218.4 173 72.3
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.7e-54 216.5 173 72.3
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.7e-54 216.5 173 72.3
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 1.7e-54 216.5 176 71.6
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 1.7e-54 216.5 181 70.2
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 2.3e-54 216.1 173 71.7
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 2.3e-54 216.1 173 71.1
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 3.0e-54 215.7 173 71.7
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 3.0e-54 215.7 173 72.3
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 3.0e-54 215.7 173 69.4
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 3.0e-54 215.7 173 70.5
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 3.0e-54 215.7 173 69.9
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 5.0e-54 214.9 182 69.2
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 1.1e-53 213.8 173 71.1
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 1.5e-53 213.4 173 71.1
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 9.5e-53 210.7 173 69.9
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 1.2e-52 210.3 173 70.5
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 1.2e-52 210.3 186 63.4
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.6e-52 209.9 194 65.5
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 1.6e-52 209.9 174 68.4
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 2.1e-52 209.5 173 68.8
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 2.1e-52 209.5 166 70.5
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 2.1e-52 209.5 173 69.9
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 4.7e-52 208.4 173 68.8
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 2.3e-51 206.1 173 67.1
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 2.3e-51 206.1 173 67.1
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 8.9e-51 204.1 162 70.4
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 3.4e-50 202.2 167 66.5
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 5.8e-50 201.4 162 71.6
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 8.3e-49 197.6 173 64.2
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 1.1e-48 197.2 150 72.7
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 2.4e-48 196.1 174 66.1
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 7.0e-48 194.5 174 64.4
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 7.0e-48 194.5 173 64.7
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 2.0e-47 193.0 174 64.4
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 3.5e-47 192.2 149 72.5
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 4.6e-47 191.8 173 63.6
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 7.8e-47 191.0 174 64.9
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 7.8e-47 191.0 144 73.6
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 7.8e-47 191.0 173 64.2
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 1.0e-46 190.7 173 64.2
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 1.0e-46 190.7 174 64.9
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 1.0e-46 190.7 174 64.9
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 1.7e-46 189.9 174 62.1
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 5.0e-46 188.3 173 62.4
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 5.0e-46 188.3 174 62.6
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 6.6e-46 188.0 174 63.2
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 1.1e-45 187.2 150 70.7
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 1.6e-44 183.3 144 72.2
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 2.1e-44 183.0 144 70.8
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 2.8e-44 182.6 143 70.6
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 2.6e-42 176.0 145 69.0
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 2.6e-42 176.0 149 67.1
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 3.4e-42 175.6 144 67.4
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 4.4e-42 175.3 162 65.4
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.7e-41 173.3 143 69.9
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 3.2e-40 169.1 144 70.1
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 3.5e-39 165.6 165 54.5
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 1.3e-38 163.7 173 58.4
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 6.6e-38 161.4 151 64.2
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 6.6e-38 161.4 165 55.2
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 3.3e-37 159.1 168 56.0
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 2.8e-36 156.0 166 53.6
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 1.6e-31 140.2 178 48.9
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 1.3e-30 137.1 162 52.5
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 2.4e-27 126.3 133 56.4
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 5.2e-27 125.2 83 75.9
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 1.5e-26 123.6 90 72.2
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 2.0e-26 123.2 111 62.2
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 3.4e-26 122.5 133 57.9
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 4.4e-26 122.1 127 54.3
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 3.8e-25 119.0 128 60.2
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 5.1e-22 108.6 65 86.2
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 2.1e-20 103.2 123 53.7
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 5.8e-18 95.1 100 58.0
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 7.6e-18 94.7 90 62.2
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 2.9e-17 92.8 174 36.2
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 5.4e-16 88.6 60 73.3
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 5.4e-16 88.6 71 69.0
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 1.2e-15 87.4 98 53.1
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.6e-15 87.0 58 77.6
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 2.1e-15 86.7 182 36.3
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 2.7e-15 86.3 60 70.0
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 2.7e-15 86.3 59 74.6
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 2.7e-15 86.3 159 37.7
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 1.0e-14 84.3 60 75.0
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 3.0e-14 82.8 90 57.8
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 5.1e-14 82.0 59 71.2
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 1.1e-13 80.9 67 67.2
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 1.5e-13 80.5 128 43.8
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 1.6e-12 77.0 60 71.7
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 3.6e-12 75.9 51 80.4
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 4.8e-12 75.5 47 78.7
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 6.2e-12 75.1 58 65.5
BolC1t00423H Brassica oleracea HOM05D000123 ORTHO05D009958 2.3e-06 56.6 57 56.1


User provided reference genes

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