Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 2.1e-79 298.9 142 100.0
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 1.2e-58 229.9 135 77.8
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 1.0e-57 226.9 135 77.0
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 5.0e-57 224.6 134 73.9
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 2.5e-56 222.2 135 76.3
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 7.2e-56 220.7 135 74.1
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 9.3e-56 220.3 135 75.6
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 4.6e-55 218.0 136 75.7
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 4.6e-55 218.0 135 73.3
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 1.8e-54 216.1 134 71.6
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 1.8e-54 216.1 135 74.1
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 3.9e-54 214.9 135 72.6
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 8.7e-54 213.8 141 71.6
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 8.7e-54 213.8 141 71.6
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 1.1e-53 213.4 135 71.9
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 1.9e-53 212.6 135 73.3
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 2.5e-53 212.2 135 71.1
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 4.3e-53 211.5 136 73.5
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 9.7e-53 210.3 135 73.3
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 1.3e-52 209.9 135 71.1
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 1.3e-52 209.9 135 72.6
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 1.6e-52 209.5 135 71.9
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 2.2e-52 209.1 135 72.6
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 2.8e-52 208.8 134 71.6
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 6.3e-52 207.6 136 70.6
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 6.3e-52 207.6 135 71.9
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 8.2e-52 207.2 135 72.6
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 1.4e-51 206.5 135 70.4
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 3.1e-51 205.3 135 68.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 4.1e-51 204.9 132 73.5
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 4.1e-51 204.9 136 70.6
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 4.1e-51 204.9 136 69.1
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 5.3e-51 204.5 141 73.0
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 5.3e-51 204.5 135 69.6
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 6.9e-51 204.1 135 71.1
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 9.1e-51 203.8 135 71.1
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 9.1e-51 203.8 135 69.6
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 1.2e-50 203.4 130 72.3
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 1.5e-50 203.0 137 70.1
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 2.0e-50 202.6 136 68.4
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 2.0e-50 202.6 135 71.9
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 4.5e-50 201.4 135 70.4
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.9e-50 201.1 134 70.9
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.7e-50 200.7 136 67.6
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.7e-50 200.7 136 67.6
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 7.7e-50 200.7 135 69.6
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 1.0e-49 200.3 137 70.1
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 1.7e-49 199.5 137 68.6
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 1.7e-49 199.5 137 68.6
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.7e-49 199.5 136 67.6
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.7e-49 199.5 136 67.6
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 2.2e-49 199.1 135 68.1
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 2.2e-49 199.1 135 68.9
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 3.8e-49 198.4 136 69.1
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 6.5e-49 197.6 101 96.0
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 1.4e-48 196.4 135 67.4
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 4.2e-48 194.9 135 66.7
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 7.2e-48 194.1 131 70.2
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.2e-47 193.4 135 65.2
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 1.2e-47 193.4 136 66.9
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 2.7e-47 192.2 130 68.5
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 3.6e-47 191.8 140 67.9
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 6.1e-47 191.0 136 67.6
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 6.1e-47 191.0 136 66.9
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 7.9e-47 190.7 93 95.7
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 7.9e-47 190.7 135 63.0
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 7.9e-47 190.7 130 69.2
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 7.9e-47 190.7 130 69.2
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 2.3e-46 189.1 136 66.9
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 2.3e-46 189.1 136 65.4
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 3.0e-46 188.7 136 66.2
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 3.9e-46 188.3 137 65.7
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 5.1e-46 188.0 135 61.5
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 6.7e-46 187.6 135 60.7
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 6.7e-46 187.6 136 66.9
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 8.8e-46 187.2 135 60.7
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 8.8e-46 187.2 129 69.0
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 1.1e-45 186.8 135 61.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 1.5e-45 186.4 140 62.1
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 2.0e-45 186.0 135 61.5
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 2.0e-45 186.0 135 61.5
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 3.3e-45 185.3 136 66.2
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 5.7e-45 184.5 135 60.0
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 7.4e-45 184.1 135 59.3
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 9.7e-45 183.7 136 63.2
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 9.7e-45 183.7 135 59.3
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 9.7e-45 183.7 136 64.7
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 1.3e-44 183.3 135 63.0
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 2.2e-44 182.6 134 61.2
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 6.3e-44 181.0 135 58.5
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 1.1e-43 180.3 135 60.0
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 1.4e-43 179.9 139 60.4
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 1.8e-43 179.5 135 60.0
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 1.8e-43 179.5 135 60.0
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 4.1e-43 178.3 136 59.6
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.3e-43 177.9 153 58.2
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 5.3e-43 177.9 135 61.5
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 5.3e-43 177.9 135 61.5
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 1.2e-42 176.8 135 59.3
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 1.2e-42 176.8 135 59.3
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 7.7e-42 174.1 138 58.7
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 1.7e-41 172.9 136 60.3
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 1.7e-41 172.9 129 62.8
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 3.8e-41 171.8 136 55.1
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 5.0e-41 171.4 136 58.8
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 8.5e-41 170.6 136 56.6
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 1.8e-38 162.9 135 57.0
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 2.4e-27 125.9 82 73.2
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 1.4e-22 110.2 145 42.1
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 2.3e-22 109.4 145 42.1
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.0e-21 106.3 80 63.8
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.2e-20 102.8 58 75.9
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 3.7e-20 102.1 83 60.2
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-17 93.6 59 71.2
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 8.6e-17 90.9 57 68.4
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 8.9e-14 80.9 134 33.6
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.7e-12 75.5 102 40.2
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.1e-11 73.9 68 51.5
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.0e-10 69.7 85 43.5
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.7e-10 69.3 57 57.9
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 5.9e-10 68.2 79 48.1


User provided reference genes

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