Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 3.7e-235 817.8 398 100.0
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 2.9e-232 808.1 398 99.0
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 1.7e-179 632.9 398 77.1
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 7.6e-172 607.4 398 74.1
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 2.1e-169 599.4 397 74.3
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.4e-165 586.6 398 69.8
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 3.1e-165 585.5 398 71.4
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 4.0e-165 585.1 398 70.9
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 5.3e-165 584.7 398 70.6
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 7.6e-164 580.9 398 69.3
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 1.7e-163 579.7 398 69.3
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 1.7e-163 579.7 398 70.6
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.9e-163 578.9 398 69.3
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.9e-162 576.2 398 68.6
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 1.9e-162 576.2 398 69.3
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 1.8e-160 569.7 392 72.2
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 3.7e-158 562.0 399 69.7
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 3.7e-158 562.0 390 69.2
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 1.4e-157 560.1 399 69.2
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 1.2e-156 557.0 390 69.2
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 1.5e-156 556.6 389 68.1
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 2.0e-156 556.2 399 68.7
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.3e-155 553.5 399 68.7
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 2.9e-155 552.4 397 69.3
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 2.9e-155 552.4 398 65.6
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 6.5e-155 551.2 398 65.6
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 1.9e-154 549.7 398 65.6
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 7.2e-154 547.7 393 68.4
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 2.3e-152 542.7 393 67.7
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 8.8e-152 540.8 389 68.9
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.1e-151 540.4 389 68.4
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 4.3e-151 538.5 391 66.8
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 7.4e-151 537.7 398 65.1
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 2.8e-150 535.8 396 66.9
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 2.8e-150 535.8 389 66.3
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 4.8e-150 535.0 389 66.8
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 1.8e-149 533.1 393 66.7
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 6.9e-149 531.2 393 66.2
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 1.5e-148 530.0 398 64.6
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 5.9e-148 528.1 393 66.2
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 7.7e-148 527.7 397 63.5
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 1.3e-147 526.9 398 63.8
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.2e-147 526.2 397 65.7
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 3.8e-147 525.4 398 63.1
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 5.0e-147 525.0 398 63.3
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 8.5e-147 524.2 400 62.8
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 1.1e-146 523.9 398 64.3
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 1.4e-146 523.5 390 63.8
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 1.9e-146 523.1 398 62.8
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 4.2e-146 521.9 398 63.3
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 4.2e-146 521.9 401 64.6
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 1.0e-144 517.3 399 63.7
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 3.3e-143 512.3 398 62.1
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 4.4e-143 511.9 389 64.3
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 4.1e-141 505.4 377 65.0
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 4.1e-141 505.4 377 65.0
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 5.3e-141 505.0 393 63.9
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 3.8e-139 498.8 391 62.9
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 2.5e-138 496.1 388 62.9
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 3.2e-138 495.7 399 62.4
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.2e-137 493.8 388 62.4
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 4.7e-137 491.9 394 61.4
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 1.4e-136 490.3 387 63.0
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 3.0e-136 489.2 394 60.9
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 1.5e-135 486.9 389 60.9
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 9.7e-135 484.2 404 60.1
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 3.7e-134 482.3 400 60.5
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 3.7e-134 482.3 388 60.3
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 4.8e-134 481.9 393 59.8
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 6.3e-134 481.5 395 60.5
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 1.1e-133 480.7 394 60.4
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 1.6e-132 476.9 394 59.4
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 5.9e-132 474.9 392 59.9
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 4.2e-130 468.8 385 59.7
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 1.6e-129 466.8 398 58.8
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 2.1e-129 466.5 394 59.1
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 8.0e-129 464.5 401 58.4
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 1.8e-128 463.4 395 58.7
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 5.2e-128 461.8 389 59.1
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 5.2e-128 461.8 389 59.1
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 8.8e-128 461.1 391 59.6
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 8.8e-128 461.1 345 64.1
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 3.4e-127 459.1 391 59.1
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 6.5e-123 444.9 314 68.8
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 2.1e-121 439.9 363 60.3
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 2.7e-121 439.5 369 59.3
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 2.6e-119 433.0 395 53.7
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 9.8e-119 431.0 394 55.8
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 3.7e-118 429.1 390 56.7
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 1.4e-117 427.2 379 55.9
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 4.2e-114 415.6 393 55.0
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 1.6e-113 413.7 361 55.4
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.7e-110 403.7 277 69.3
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 9.2e-109 397.9 361 55.7
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 1.9e-101 373.6 386 52.1
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 2.4e-101 373.2 394 49.5
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 5.4e-101 372.1 263 68.8
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 1.1e-96 357.8 245 69.4
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 1.8e-96 357.1 260 68.5
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 1.0e-91 341.3 393 43.5
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 1.1e-85 321.2 400 41.2
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 7.3e-82 308.5 365 42.5
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 3.1e-80 303.1 192 75.5
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 5.1e-75 285.8 146 94.5
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 8.4e-70 268.5 193 66.3
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 4.2e-69 266.2 250 55.2
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 6.0e-68 262.3 194 68.6
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.1e-64 251.5 198 64.6
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 2.0e-63 247.3 159 72.3
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.1e-56 223.4 163 67.5
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 8.4e-54 215.3 233 48.1
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 5.5e-53 212.6 150 72.7
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 4.3e-50 203.0 201 55.2
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 4.5e-47 193.0 152 65.8
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 4.2e-45 186.4 245 42.9
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 4.2e-45 186.4 138 63.8
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 2.1e-44 184.1 93 96.8
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 6.1e-44 182.6 109 78.9
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 3.3e-42 176.8 423 29.1
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 5.7e-42 176.0 364 31.9
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 1.1e-40 171.8 143 65.0
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 1.8e-40 171.0 169 50.9
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 5.0e-38 162.9 370 31.6
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.7e-34 149.4 99 71.7
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 6.1e-28 129.4 93 72.0
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 2.4e-24 117.5 476 24.8
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 1.5e-21 108.2 216 34.3
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 3.2e-21 107.1 231 33.3
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 3.7e-17 93.6 85 50.6
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 8.5e-14 82.4 84 48.8
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 1.9e-13 81.3 54 72.2
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 4.4e-10 70.1 70 58.6
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 9.8e-10 68.9 94 45.7


User provided reference genes

Program Settings