Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2360 Acer truncatum HOM05D003981 ORTHO05D003666 3.2e-80 301.6 142 100.0
Atru.chr5.2441 Acer truncatum HOM05D003981 ORTHO05D003666 4.1e-19 98.6 129 39.5
TAR624G0631 Trochodendron aralioides HOM05D000007 ORTHO05D003666 7.2e-16 87.8 126 41.3
Ciclev10006982m.g Citrus clementina HOM05D003981 ORTHO05D003666 2.1e-15 86.3 121 42.1
Ciclev10006826m.g Citrus clementina HOM05D000007 ORTHO05D003666 2.3e-14 82.8 150 33.3
Haze_25176 Corylus avellana HOM05D000007 ORTHO05D003666 5.2e-14 81.6 127 42.5
Atru.chr9.1609 Acer truncatum HOM05D003981 ORTHO05D003666 6.3e-12 74.7 127 36.2
Atru.chr5.2443 Acer truncatum HOM05D003981 ORTHO05D003666 1.2e-10 70.5 124 33.9
CiPaw.13G152900 Carya illinoinensis HOM05D000007 ORTHO05D003666 1.6e-10 70.1 131 38.2
AT3G47150 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.9e-10 68.2 142 33.8
TAR624G0698 Trochodendron aralioides HOM05D000007 ORTHO05D003666 7.8e-10 67.8 72 48.6
FvH4_5g07470 Fragaria vesca HOM05D003981 ORTHO05D003666 2.9e-09 65.9 142 33.1
FvH4_5g07510 Fragaria vesca HOM05D003981 ORTHO05D003666 3.8e-09 65.5 141 33.3
TAR626G0901 Trochodendron aralioides HOM05D000007 ORTHO05D000017 3.8e-09 65.5 126 31.0
FvH4_5g07350 Fragaria vesca HOM05D003981 ORTHO05D003666 5.0e-09 65.1 142 33.1
FAN09G0546 Fragaria x ananassa HOM05D003981 ORTHO05D003666 5.0e-09 65.1 143 30.8
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 5.0e-09 65.1 143 30.8
QL08p033970 Quercus lobata HOM05D000007 ORTHO05D003666 1.1e-08 63.9 132 35.6
AL1G54130 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.5e-08 63.5 137 29.9
FvH4_6g45801 Fragaria vesca HOM05D003981 ORTHO05D003666 1.5e-08 63.5 143 30.1
Aqoxy4G00448 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.9e-08 63.2 124 33.1
Haze_23197 Corylus avellana HOM05D000007 ORTHO05D003666 1.9e-08 63.2 130 35.4
FvH4_6g33750 Fragaria vesca HOM05D000007 ORTHO05D000039 1.9e-08 63.2 130 33.8
CSS0040592 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D003666 2.5e-08 62.8 133 32.3
FAN13G2481 Fragaria x ananassa HOM05D003981 ORTHO05D003666 2.5e-08 62.8 136 34.6
FAN04G2111 Fragaria x ananassa HOM05D003981 ORTHO05D003666 5.6e-08 61.6 139 33.8
FAN09G3540 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.6e-08 61.6 122 35.2
FAN08G0171 Fragaria x ananassa HOM05D003981 ORTHO05D003666 7.3e-08 61.2 139 33.1
RcHm_v2.0_Chr2g0143631 Rosa chinensis HOM05D000007 ORTHO05D000039 7.3e-08 61.2 130 32.3
Haze_17607 Corylus avellana HOM05D000007 ORTHO05D003666 9.5e-08 60.8 132 37.9
CSS0034833 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D003666 1.6e-07 60.1 129 31.0
DCAR_024299 Daucus carota HOM05D000007 ORTHO05D003666 1.6e-07 60.1 132 31.8
Eucgr.G02383 Eucalyptus grandis HOM05D000171 ORTHO05D000101 1.6e-07 60.1 131 29.8
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.1e-07 59.7 60 53.3
FAN19G2785 Fragaria x ananassa HOM05D003981 ORTHO05D003666 2.1e-07 59.7 143 34.3
AL1G62520 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.8e-07 59.3 149 29.5
BolC4t22474H Brassica oleracea HOM05D000171 ORTHO05D000101 2.8e-07 59.3 133 30.1
Ciclev10006577m.g Citrus clementina HOM05D003981 ORTHO05D003666 2.8e-07 59.3 89 40.4
Eucgr.E01420 Eucalyptus grandis HOM05D000007 ORTHO05D003666 2.8e-07 59.3 127 37.0
Thecc.04G197200 Theobroma cacao HOM05D000007 ORTHO05D000017 2.8e-07 59.3 132 34.1
Medtr4g117850 Medicago truncatula HOM05D000007 ORTHO05D000017 3.6e-07 58.9 102 32.4
Prupe.8G061400 Prunus persica HOM05D003981 ORTHO05D003666 3.6e-07 58.9 130 34.6
A09p24100 Brassica napus HOM05D000171 ORTHO05D000101 4.7e-07 58.5 146 30.8
DCAR_002092 Daucus carota HOM05D000007 ORTHO05D003666 4.7e-07 58.5 126 33.3
Thhalv10029487m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.7e-07 58.5 140 30.7
FvH4_1g25190 Fragaria vesca HOM05D003981 ORTHO05D003666 4.7e-07 58.5 144 34.0
Nn1g03296 Nelumbo nucifera HOM05D000007 ORTHO05D003666 4.7e-07 58.5 131 29.8
SGA_v2.0_scaffold32G13279 Striga asiatica HOM05D000007 ORTHO05D000039 4.7e-07 58.5 129 30.2
AL4G44390 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.1e-07 58.2 140 32.1
AL5G26410 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.1e-07 58.2 142 31.0
AT1G47730 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 8.0e-07 57.8 131 29.0
Lalb_Chr03g0040301 Lupinus albus HOM05D000007 ORTHO05D000521 8.0e-07 57.8 138 27.5
Lalb_Chr03g0040311 Lupinus albus HOM05D000007 ORTHO05D000521 8.0e-07 57.8 138 27.5
TWI59G0188 Tripterygium wilfordii HOM05D003981 ORTHO05D003666 8.0e-07 57.8 137 30.7
Aqoxy2G03513 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.0e-06 57.4 82 39.0
Aqoxy5G04201 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.0e-06 57.4 130 30.8
CSS0047157 Camellia sinensis var. sinensis HOM05D000171 ORTHO05D010908 1.0e-06 57.4 48 50.0
Oeu028341.1 Olea europaea HOM05D000007 ORTHO05D000039 1.0e-06 57.4 128 30.5
AL1G53100 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.4e-06 57.0 142 28.9
A05p07390 Brassica napus HOM05D000171 ORTHO05D000101 1.4e-06 57.0 135 28.9
BraA05t19705Z Brassica rapa HOM05D000171 ORTHO05D000101 1.4e-06 57.0 135 28.9
Psat0s2190g0080 Pisum sativum HOM05D000007 ORTHO05D000017 1.4e-06 57.0 132 32.6
Aa31LG11G6350 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.8e-06 56.6 149 25.5
Carub.0005s1326 Capsella rubella HOM05D000171 ORTHO05D000101 1.8e-06 56.6 134 28.4
CARHR158400 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.8e-06 56.6 134 28.4
Potri.001G318400 Populus trichocarpa HOM05D000007 ORTHO05D000017 1.8e-06 56.6 135 30.4
RcHm_v2.0_Chr2g0164001 Rosa chinensis HOM05D003981 ORTHO05D003666 1.8e-06 56.6 142 30.3
FAN26G1843 Fragaria x ananassa HOM05D000001 ORTHO05D009432 2.3e-06 56.2 52 44.2
Medtr1g055070 Medicago truncatula HOM05D000007 ORTHO05D000017 2.3e-06 56.2 64 45.3
Medtr4g109270 Medicago truncatula HOM05D000007 ORTHO05D000017 2.3e-06 56.2 55 43.6
QL07p033575 Quercus lobata HOM05D000007 ORTHO05D003666 2.3e-06 56.2 56 50.0
Atru.chr1.120 Acer truncatum HOM05D000007 ORTHO05D000017 3.0e-06 55.8 130 33.1
BcaB07g30684 Brassica carinata HOM05D000171 ORTHO05D000101 3.0e-06 55.8 139 31.7
Haze_02856 Corylus avellana HOM05D000007 ORTHO05D000039 3.0e-06 55.8 141 31.2
Potri.008G216000 Populus trichocarpa HOM05D000007 ORTHO05D000521 3.0e-06 55.8 141 29.1
BcaB02g09153 Brassica carinata HOM05D000171 ORTHO05D000101 4.0e-06 55.5 132 29.5
FvH4_5g31171 Fragaria vesca HOM05D003981 ORTHO05D003666 4.0e-06 55.5 141 32.6
PSO675G4476 Papaver somniferum HOM05D000007 ORTHO05D000017 4.0e-06 55.5 61 45.9
Potri.008G215800 Populus trichocarpa HOM05D000007 ORTHO05D000521 4.0e-06 55.5 141 29.1
unitig_26.g8888 Utricularia gibba HOM05D000007 ORTHO05D000017 4.0e-06 55.5 129 31.0
VMungo0540G1624 Vigna mungo HOM05D000007 ORTHO05D000039 4.0e-06 55.5 131 27.5
VMungo0540G1659 Vigna mungo HOM05D000007 ORTHO05D000039 4.0e-06 55.5 137 25.5
Eucgr.J00721 Eucalyptus grandis HOM05D000007 ORTHO05D003666 5.2e-06 55.1 132 33.3
FvH4_1g18470 Fragaria vesca HOM05D000007 ORTHO05D000017 5.2e-06 55.1 52 46.2
PSO017G6011 Papaver somniferum HOM05D000007 ORTHO05D000017 5.2e-06 55.1 138 26.8
PSO675G8644 Papaver somniferum HOM05D000007 ORTHO05D000017 5.2e-06 55.1 154 28.6
Psat0s2190g0040 Pisum sativum HOM05D000007 ORTHO05D000017 5.2e-06 55.1 131 32.1
BcaB06g26049 Brassica carinata HOM05D000209 ORTHO05D000129 6.8e-06 54.7 115 33.9
A09p45340 Brassica napus HOM05D000171 ORTHO05D000101 6.8e-06 54.7 134 32.1
A09p63210 Brassica napus HOM05D001738 ORTHO05D001644 6.8e-06 54.7 137 30.7
BraA09t39997Z Brassica rapa HOM05D000171 ORTHO05D000101 6.8e-06 54.7 134 32.1
BraA09t39998Z Brassica rapa HOM05D000171 ORTHO05D000101 6.8e-06 54.7 134 32.1
BraA09t41673Z Brassica rapa HOM05D001738 ORTHO05D001644 6.8e-06 54.7 137 30.7
FvH4_1g18380 Fragaria vesca HOM05D000007 ORTHO05D000017 6.8e-06 54.7 52 44.2
RcHm_v2.0_Chr7g0226431 Rosa chinensis HOM05D000007 ORTHO05D000017 6.8e-06 54.7 132 33.3
Ciclev10013838m.g Citrus clementina HOM05D000007 ORTHO05D000017 8.9e-06 54.3 80 36.2
RcHm_v2.0_Chr7g0226441 Rosa chinensis HOM05D000007 ORTHO05D000017 8.9e-06 54.3 132 34.1


User provided reference genes

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