Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 2.0e-27 125.2 68 100.0
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 4.8e-18 94.0 65 80.0
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 6.3e-18 93.6 61 86.9
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 1.1e-17 92.8 61 85.2
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.1e-17 91.3 63 84.1
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 3.1e-17 91.3 60 86.7
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 4.1e-17 90.9 60 86.7
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 5.3e-17 90.5 61 83.6
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 5.3e-17 90.5 60 86.7
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 7.0e-17 90.1 61 78.7
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.0e-17 90.1 62 82.3
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 9.1e-17 89.7 61 83.6
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.2e-16 89.4 61 83.6
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.2e-16 89.4 61 83.6
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.6e-16 89.0 62 82.3
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.6e-16 89.0 62 82.3
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.6e-16 89.0 61 83.6
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.6e-16 89.0 64 81.2
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 2.0e-16 88.6 60 85.0
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.7e-16 88.2 61 80.3
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.7e-16 88.2 60 85.0
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.5e-16 87.8 61 77.0
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 3.5e-16 87.8 61 78.7
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 3.5e-16 87.8 62 79.0
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 4.5e-16 87.4 65 72.3
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.5e-16 87.4 62 80.6
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 4.5e-16 87.4 61 83.6
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 5.9e-16 87.0 61 82.0
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 5.9e-16 87.0 61 80.3
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.9e-16 87.0 62 80.6
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 7.7e-16 86.7 61 78.7
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 7.7e-16 86.7 60 83.3
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.7e-16 86.7 61 80.3
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.7e-16 86.7 61 78.7
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.0e-15 86.3 65 76.9
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.0e-15 86.3 61 82.0
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.3e-15 85.9 61 78.7
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.7e-15 85.5 62 74.2
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.2e-15 85.1 61 77.0
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.2e-15 85.1 62 79.0
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.2e-15 85.1 61 77.0
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.2e-15 85.1 61 77.0
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.8e-15 84.3 61 75.4
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.8e-15 84.3 60 80.0
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 3.8e-15 84.3 59 81.4
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 5.0e-15 84.0 60 80.0
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.0e-15 84.0 61 78.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 5.0e-15 84.0 61 75.4
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 6.5e-15 83.6 59 83.1
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.5e-15 83.6 65 73.8
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.5e-15 83.6 65 73.8
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 6.5e-15 83.6 61 78.7
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 8.5e-15 83.2 61 77.0
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.1e-14 82.8 52 86.5
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.1e-14 82.8 60 78.3
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.5e-14 82.4 61 78.7
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.5e-14 82.4 56 82.1
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.5e-14 82.4 62 77.4
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 1.5e-14 82.4 62 71.0
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 1.5e-14 82.4 62 71.0
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 2.5e-14 81.6 60 76.7
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 2.5e-14 81.6 61 75.4
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.2e-14 81.3 61 77.0
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 3.2e-14 81.3 60 80.0
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.2e-14 81.3 60 76.7
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 3.2e-14 81.3 60 76.7
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 3.2e-14 81.3 57 80.7
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.2e-14 81.3 59 78.0
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 5.5e-14 80.5 63 76.2
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 9.4e-14 79.7 60 70.0
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 9.4e-14 79.7 59 74.6
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.2e-13 79.3 56 78.6
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.1e-13 78.6 61 67.2
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.7e-13 78.2 60 73.3
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 2.7e-13 78.2 61 72.1
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 4.7e-13 77.4 65 69.2
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 4.7e-13 77.4 65 70.8
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 6.1e-13 77.0 65 69.2
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 8.0e-13 76.6 65 67.7
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 1.4e-12 75.9 62 69.4
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 1.4e-12 75.9 63 73.0
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 2.3e-12 75.1 61 68.9
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 4.0e-12 74.3 65 67.7
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 4.0e-12 74.3 65 67.7
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 6.8e-12 73.6 52 80.8
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.5e-11 72.4 63 60.3
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.5e-11 72.4 63 60.3
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.5e-11 72.4 66 63.6
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.0e-11 72.0 66 60.6
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 2.0e-11 72.0 66 60.6
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 2.6e-11 71.6 64 65.6
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 2.6e-11 71.6 64 65.6
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.6e-11 71.6 66 60.6
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.4e-11 71.2 61 70.5
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 4.4e-11 70.9 66 59.1
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 4.4e-11 70.9 59 69.5
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 5.7e-11 70.5 64 67.2
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 5.7e-11 70.5 64 67.2
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 7.5e-11 70.1 64 67.2
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 7.5e-11 70.1 64 67.2
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 7.5e-11 70.1 64 67.2
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.7e-10 68.9 67 59.7
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 3.7e-10 67.8 68 61.8
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.8e-10 67.4 66 56.1
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.8e-10 67.4 66 56.1
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 8.3e-10 66.6 66 59.1
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 1.1e-09 66.2 54 72.2
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.1e-09 66.2 67 58.2
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.4e-09 65.9 66 53.0
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.4e-09 65.9 66 54.5
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-09 65.9 66 54.5
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.8e-09 65.5 56 62.5
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 3.1e-09 64.7 65 58.5
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 4.1e-09 64.3 61 57.4
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.4e-09 63.9 66 53.0
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 5.4e-09 63.9 61 55.7
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 5.4e-09 63.9 66 53.0
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.4e-09 63.9 70 55.7
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 7.0e-09 63.5 61 57.4
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 7.0e-09 63.5 52 75.0
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 7.0e-09 63.5 66 57.6
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 9.1e-09 63.2 59 59.3
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 9.1e-09 63.2 61 55.7
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.0e-08 62.0 63 57.1
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.7e-08 61.6 61 57.4
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 3.5e-08 61.2 66 54.5
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.5e-08 60.8 67 49.3
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.0e-07 59.7 62 51.6
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.3e-07 59.3 61 54.1
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.3e-07 59.3 61 55.7
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.3e-07 59.3 66 53.0
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.7e-07 58.9 61 54.1
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.3e-07 58.5 61 50.8
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.9e-07 58.2 61 54.1
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.9e-07 58.2 70 51.4
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.9e-07 58.2 70 51.4
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 3.8e-07 57.8 61 52.5
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.8e-07 57.8 66 50.0
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.8e-07 57.8 66 50.0
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 6.6e-07 57.0 65 46.2
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.6e-07 57.0 66 48.5
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 6.6e-07 57.0 65 46.2
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-06 56.2 67 49.3
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 1.5e-06 55.8 64 50.0
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.5e-06 55.8 64 50.0
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.5e-06 55.8 59 55.9
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 2.5e-06 55.1 67 52.2
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 2.5e-06 55.1 67 52.2
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.5e-06 55.1 70 48.6
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 2.5e-06 55.1 65 46.2
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.5e-06 55.1 60 51.7
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 3.3e-06 54.7 64 46.9
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 4.2e-06 54.3 61 50.8


User provided reference genes

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